1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagcggatggcacagtgccatcctgcatttgccaatgtgaatgttgaaggcgaacattgtgttttaatgtaaagttgagttgtaatgtatctgtttttaaaacctgcagAATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAATAAACAGGTTAACCCCTATGCTCGGCAGGGGCCACTAGCATCTGCTGTCC
species | Physcomitrella patens |
transcript | PP1S47_13V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTATGAACACTACNAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAG AATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAATEST: gi|162228050|gb|FC404631.1|FC404631
genomic: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAGgtaagcggat ... aaacctgcagAATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAAT
EST: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAG AATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAATEST: gi|67718132|gb|BJ968391.1|BJ968391
genomic: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAGgtaagcggat ... aaacctgcagAATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAAT
EST: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAG AATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAATEST: gi|100352908|gb|BY945510.1|BY945510
genomic: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAGgtaagcggat ... aaacctgcagAATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAAT
EST: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAG AATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAA-TEST: gi|100389604|gb|BY952410.1|BY952410
genomic: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAGgtaagcggat ... aaacctgcagAATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAAT
EST: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAG AATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAATEST: gi|208384936|gb|DC903443.1|DC903443
genomic: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAGgtaagcggat ... aaacctgcagAATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAAT
EST: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAG AATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAAT
genomic: TTATGAACACTACAAAGGAGTTCAAGGATGTCCTTACTTTACGAACTGAGgtaagcggat ... aaacctgcagAATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAAT
cattgtgttttaatgtaaagttgagttgtaatgtatctgtttttaaaacctgcagAATCTGAAGGTTCACGATAATCGACGACAGCTCTTCACAGCTTCTCCAAATAAACAGGTTAACCCCTATGCTCGGCAGGGGCCACTAGCATCTGCTGTCC
ttttaat putative branch site (score: 6)
ttttaatgtaaagtt TA-rich tract