1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagcttgagaactgatatttctctaatccttcttggttttcgtattgttttcgatccaatgcattctctagtggatgtggttttatgctcaaaatagcttcagcttgacacacaatatttttttctgtcgcagGATGCAAATATTTCACAATTTAATGAGAGCATAAGTATATGCGAGCGCATAATTCGCACGCCCATCCCACTTGCCTATACGCGATTGACATCACGAATTT
species | Physcomitrella patens |
transcript | PP1S47_118V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTATCCAGCTCGAAGATGGAGAGAGAAGCNTTCTG GATGCAAATATTTCACAATTTAATGAGAGCATAAGTATATGCGAGCGCATAEST: gi|162230689|gb|FC406112.1|FC406112
genomic: GTATCCAGCTCGAAGATGGAGAGAGAAGCCTTCTGgtgagcttga ... tctgtcgcagGATGCAAATATTTCACAATTTAATGAGAGCATAAGTATATGCGAGCGCATA
EST: CTCATTCTTTGAAATGTATCCAGCTCGAAGATGGAGAGAGAAGCCTTCTG GATGCAAATATTTCACAATTTAATGAGAGCATAAGTATATGCGAGCGCATA
genomic: CTCATTCTTTGAAATGTATCCAGCTCGAAGATGGAGAGAGAAGCCTTCTGgtgagcttga ... tctgtcgcagGATGCAAATATTTCACAATTTAATGAGAGCATAAGTATATGCGAGCGCATA
ggttttatgctcaaaatagcttcagcttgacacacaatatttttttctgtcgcagGATGCAAATATTTCACAATTTAATGAGAGCATAAGTATATGCGAGCGCATAATTCGCACGCCCATCCCACTTGCCTATACGCGATTGACATCACGAATTT
gcttgac putative branch site (score: 4)
tatttttttctgtc putative PPT
acacaatattttttt TA-rich tract