1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaacgagtgttaagttagtgtccattgagccagaaaaatctgaatccaacttagttagtattctaattggcttgatcaaacgcttcggtggtctttgcagTCAAGCTCAATGCTGGTAGGAATGTTGTTGGAGTCCTGCGTGGATTTGACCAGTTCATGAACCTTGTACTGGATAACACTGTTGAGATCAATGGTGCTGA
species | Physcomitrella patens |
transcript | PP1S475_6V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCAGGGCAACCCCCGGATTTGAAGAAGTACATGGACAAGAAGCTGAACA TCAAGCTCAATGCTGGTAGGAATGTTGTTGGAGTCCTGCGTGGATTTGACCEST: gi|67692732|gb|BJ952965.1|BJ952965
genomic: ATCAGGGCAACCCCCGGATTTGAAGAAGTACATGGACAAGAAGCTGAACAgtaagacatg ... gtctttgcagTCAAGCTCAATGCTGGTAGGAATGTTGTTGGAGTCCTGCGTGGATTTGACC
EST: ATCAGGGCAACCCCCGGATTTGAAGAAGTACATGGACAAGAAGCTGAACA TCAAGCTCAATGCTGGTAGGAATGTTGTTGGAGTCCTGCGTGGATTTGACC
genomic: ATCAGGGCAACCCCCGGATTTGAAGAAGTACATGGACAAGAAGCTGAACAgtaagacatg ... gtctttgcagTCAAGCTCAATGCTGGTAGGAATGTTGTTGGAGTCCTGCGTGGATTTGACC
ccaacttagttagtattctaattggcttgatcaaacgcttcggtggtctttgcagTCAAGCTCAATGCTGGTAGGAATGTTGTTGGAGTCCTGCGTGGATTTGACCAGTTCATGAACCTTGTACTGGATAACACTGTTGAGATCAATGGTGCTGA
tctttgc CT-rich tract
ttagtattctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacgagtgttaagttagtgtccattgagccagaaaaatctgaatccaacttagttagtattctaattggcttgatcaaacgcttcggtggtctttgcagTCAAGCTCAATGCTGGTAGGAATGTTGTTGGAGTCCTGCGTGGATTTGACCAGTTCATGAACCTTGTACTGGATAACACTGTTGAGATCAATGGTGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA