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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgatggcaggagatcggaagcatgtggacgattttcctatgcttgaagaatctctagtggaacaagaaatatgattggttttgggatgctttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGAAGGGGTAGATTCTGTGGAAGGTGTTGAAGCCATCTTGTACCAAGTTCCT

Basic information

species Physcomitrella patens
transcript PP1S475_5V6.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100386922|gb|BY988191.1|BY988191
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208397445|gb|DC908293.1|DC908293
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100380074|gb|BY968833.1|BY968833
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100444306|gb|BY982335.1|BY982335
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208363554|gb|DC939759.1|DC939759
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100399593|gb|BY972796.1|BY972796
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208390544|gb|DC937476.1|DC937476
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208387979|gb|DC941660.1|DC941660
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100363154|gb|BY984384.1|BY984384
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100361311|gb|BY965777.1|BY965777
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208353749|gb|DC938774.1|DC938774
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100436356|gb|BY961176.1|BY961176
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100448045|gb|CJ972344.1|CJ972344
EST:     ACTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208393625|gb|DC904341.1|DC904341
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208363503|gb|DC935268.1|DC935268
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208362744|gb|DC950544.1|DC950544
EST:     GGAAGGTTAAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGC-TACACTGGCAAAAAAGATGAAGGA
genomic: GGAAGGTT-AAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100361247|gb|BY946987.1|BY946987
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208377817|gb|DC940929.1|DC940929
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100352993|gb|BY945553.1|BY945553
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|19780785|gb|BQ039612.1|BQ039612
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208375821|gb|DC926913.1|DC926913
EST:     AAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: AAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208377161|gb|DC910893.1|DC910893
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208367185|gb|DC935971.1|DC935971
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100359621|gb|BY947072.1|BY947072
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208356449|gb|DC914311.1|DC914311
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100417104|gb|BY957169.1|BY957169
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208376275|gb|DC940973.1|DC940973
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCNNNNNNNNTGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208348213|gb|DC913150.1|DC913150
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208364585|gb|DC935370.1|DC935370
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208353611|gb|DC929696.1|DC929696
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208385419|gb|DC956631.1|DC956631
EST:     TATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTNTACTCCATGTACGGACACGTGCTTACACTGGCNAAAAAGATGAAGGA
genomic: TATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208388933|gb|DC932961.1|DC932961
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100441661|gb|BY962752.1|BY962752
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|162239073|gb|FC418500.1|FC418500
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208386010|gb|DC956526.1|DC956526
EST:     TAAAGTGTTCATCGT                         ATTNTACTCCATGTACGGACACGTGCNTACACTGGCAAAAAAGATGAAGGA
genomic: TAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208361391|gb|DC935092.1|DC935092
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100361900|gb|BY947683.1|BY947683
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAACATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|18345606|gb|BJ177649.1|BJ177649
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100438940|gb|BY961880.1|BY961880
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100368731|gb|BY967143.1|BY967143
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208351539|gb|DC909983.1|DC909983
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100423148|gb|BY958170.1|BY958170
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100445803|gb|CJ970102.1|CJ970102
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|100451898|gb|CJ974997.1|CJ974997
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
EST: gi|208373459|gb|DC931890.1|DC931890
EST:     ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGT                         ATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA
genomic: ATTTCAAGTGCAGCCCCAATATCAAGTGGGAAGGTTAAAGTGTTCATCGTgtaagttgtt ... tttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagaatctctagtggaacaagaaatatgattggttttgggatgctttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGAAGGGGTAGATTCTGTGGAAGGTGTTGAAGCCATCTTGTACCAAGTTCCT
                                            ctttgat  putative branch site (score: 5)
                      aaatatgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgatggcaggagatcggaagcatgtggacgattttcctatgcttgaagaatctctagtggaacaagaaatatgattggttttgggatgctttgatgcagATTCTACTCCATGTACGGACACGTGCTTACACTGGCAAAAAAGATGAAGGAAGGGGTAGATTCTGTGGAAGGTGTTGAAGCCATCTTGTACCAAGTTCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC