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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtagttgttgacccttcgtatatcagtgctggaggaggagaacctataagttgttgtgattacgggttgacgtaacgcaaatcctgctgggctcatggttgcagGTGGCAGGACTTGCAGAATCGTTGGAGATACCTATCTTGAATGACATTGTCATGGTTTTAGGATCCCTCTCTCAG

Basic information

species Physcomitrella patens
transcript PP1S475_19V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100452284|gb|CJ975193.1|CJ975193
EST:     AGGTAGCCGGCGCCTTGGACTCCAAATATCAAGGCCAAGACGCGGGTGAG                         GTGGCAGGACTTGCAGAATCGTTGGAGATACCTATCTTGAATGACATTGTC
genomic: AGGTAGCCGGCGCCTTGGACTCCAAATATCAAGGCCAAGACGCGGGTGAGgtacgtagtt ... atggttgcagGTGGCAGGACTTGCAGAATCGTTGGAGATACCTATCTTGAATGACATTGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgttgtgattacgggttgacgtaacgcaaatcctgctgggctcatggttgcagGTGGCAGGACTTGCAGAATCGTTGGAGATACCTATCTTGAATGACATTGTCATGGTTTTAGGATCCCTCTCTCAG
                    acgtaac  putative branch site (score: 3)