1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcgtatgttgtgaattaatcatgtgttaaagtttaggtgaagcttatgtgcttaagtatcaccttaatgtaatgctgaatgtagtcaaagcagggatattatgtgattgcaaatgagtagtattcagtacaatttcttctctaactggccggttcctcattctttcagATATTGGTCATGATTTTGATACAAAGAGATCTGCAAGATGTAGGCCGCCGCAAATGTCTATATCACAAGGCTTTTCGTCAGCGGGGAGGCGTGCAGTGTC
species | Physcomitrella patens |
transcript | PP1S475_17V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATACAAGCTACTGCATTTAAGGATGGGACGCTTGCAGAGAGACATGCAG ATATTGGTCATGATTTTGATACANAGAGATCTGCAAGATGTAGGCCGCEST: gi|100400047|gb|BY990752.1|BY990752
genomic: TATACAAGCTACTGCATTTAAGGATGGGACGCTTGCAGAGAGACATGCAGgttcgtatgt ... attctttcagATATTGGTCATGATTTTGATACAAAGAGATCTGCAAGATGTAGGCCGC
EST: TATACAAGCTACTGCATTTAAAGATGGGACGCTGGCAGAGAGACATGCAG ATATTGGTCATGATTTTGATACAAEST: gi|100374693|gb|BY949023.1|BY949023
genomic: TATACAAGCTACTGCATTTAAGGATGGGACGCTTGCAGAGAGACATGCAGgttcgtatgt ... attctttcagATATTGGTCATGATTTTGATACAA
EST: TATACAAGCTACTGCATTTAAGGATGGGACGCTTGCAGAGAGACATGCAG ATATTGGTCATGATTTTGATACAAAGAGATCTGCAAGATGTNAGGCNGC-G
genomic: TATACAAGCTACTGCATTTAAGGATGGGACGCTTGCAGAGAGACATGCAGgttcgtatgt ... attctttcagATATTGGTCATGATTTTGATACAAAGAGATCTGCAAGATGT-AGGCCGCCG
tgagtagtattcagtacaatttcttctctaactggccggttcctcattctttcagATATTGGTCATGATTTTGATACAAAGAGATCTGCAAGATGTAGGCCGCCGCAAATGTCTATATCACAAGGCTTTTCGTCAGCGGGGAGGCGTGCAGTGTC
ctctaac putative branch site (score: 9)
ttcctcattctttc putative PPT
tacaattt TA-rich tract