1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaatgtctcagacttttttgaaattcgctgcaagatctttaggctttttgtgattcttaagcataaattttgacctctaaaccgttgttgtattaaatagGCTGGTTATGATTACACCGACAAAGAATTTGATGCTGTGTTTAAGCGCATCTATGGAATCTTTGGGTCTGCAGCGCCATACGAAGTATTTGAAGACGCAA
species | Physcomitrella patens |
transcript | PP1S474_4V6.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTTCTGTGAG GCTGGTTATGATTACACCGACAAAGAATTTGATGCTGTGTTTAAGCGCATCEST: gi|162275769|gb|FC451940.1|FC451940
genomic: CCTTCTGTGAGgtacgatctc ... tattaaatagGCTGGTTATGATTACACCGACAAAGAATTTGATGCTGTGTTTAAGCGCATC
EST: TGTTAGAAAGGCCTTCTGTGAG GCTGGTTATGATTACACCGACAAAGAATTTGATGCTGTGTTTAAGCGCATCEST: gi|100440826|gb|BY962315.1|BY962315
genomic: TGTTAGAAAGGCCTTCTGTGAGgtacgatctc ... tattaaatagGCTGGTTATGATTACACCGACAAAGAATTTGATGCTGTGTTTAAGCGCATC
EST: TTTCATACCAGGAGTGGTGGCGGACATGTGTTAGAAAGGCCTTCTGTGAG GCTGGTTATGATTACACCGACNAAGAATTTGATGCTGTGTTTAAGCGCATC
genomic: TTTCAAACCAGGAGTGGTGGCGGACATGTGTTAGAAAGGCCTTCTGTGAGgtacgatctc ... tattaaatagGCTGGTTATGATTACACCGACAAAGAATTTGATGCTGTGTTTAAGCGCATC
ttttgtgattcttaagcataaattttgacctctaaaccgttgttgtattaaatagGCTGGTTATGATTACACCGACAAAGAATTTGATGCTGTGTTTAAGCGCATCTATGGAATCTTTGGGTCTGCAGCGCCATACGAAGTATTTGAAGACGCAA
ctctaaa putative branch site (score: 3)
ttaagcataaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatgtctcagacttttttgaaattcgctgcaagatctttaggctttttgtgattcttaagcataaattttgacctctaaaccgttgttgtattaaatagGCTGGTTATGATTACACCGACAAAGAATTTGATGCTGTGTTTAAGCGCATCTATGGAATCTTTGGGTCTGCAGCGCCATACGAAGTATTTGAAGACGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA