Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtaactccagttgaaaactcataatatactctctggggttcgtagtagctagatgtagttgacataaagagacgcgacgtttccagttcaagtcctggctgaacagtctctcgtgtgatgcagGCATCATTCCCAAGTTGGAAGAAGGAGCCACGACGCCTACTTCGCGACCAGCACGGCCCACATTAAAAAAGCTTCAACCGCGGCTCCGAGTTGGACACAA

Basic information

species Physcomitrella patens
transcript PP1S473_3V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162161632|gb|FC339047.1|FC339047
EST:     AGCCAGTACAATTCATCAGCCACCTCAGGGAATCAGCGATGCACAAGGAG                         GCATCATTCCCAAGTTGGAAGAAGGAGCCACGACGCCTACTTCGCGACCAG
genomic: AGCCAGTACAATTCATCAGCCACCTCAGGGAATCAGCGATGCACAAGGAGgtagtaactc ... tgtgatgcagGCATCATTCCCAAGTTGGAAGAAGGAGCCACGACGCCTACTTCGCGACCAG
EST: gi|37836704|gb|BJ594712.1|BJ594712
EST:     AGCCAGTACAATTCATCAGCCACCTCAGGGAATCAGCGATGCACAAGGAG                         GCATCATTCCCAAGTTGGAAGAAGGAGCCACGACGCCTACTTCGCGACCAG
genomic: AGCCAGTACAATTCATCAGCCACCTCAGGGAATCAGCGATGCACAAGGAGgtagtaactc ... tgtgatgcagGCATCATTCCCAAGTTGGAAGAAGGAGCCACGACGCCTACTTCGCGACCAG
EST: gi|162161633|gb|FC339048.1|FC339048
EST:     AGCCAGTACAATTCATCAGCCACCTCAGGGAATCAGCGATGCACAAGGAG                         GCATCATTCCCAAGTTGGAAGAAGGAGCCACGACGCCTACTTCGCGACCAG
genomic: AGCCAGTACAATTCATCAGCCACCTCAGGGAATCAGCGATGCACAAGGAGgtagtaactc ... tgtgatgcagGCATCATTCCCAAGTTGGAAGAAGGAGCCACGACGCCTACTTCGCGACCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagacgcgacgtttccagttcaagtcctggctgaacagtctctcgtgtgatgcagGCATCATTCCCAAGTTGGAAGAAGGAGCCACGACGCCTACTTCGCGACCAGCACGGCCCACATTAAAAAAGCTTCAACCGCGGCTCCGAGTTGGACACAA
                                      tctctcgt  CT-rich tract