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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgtttcctttctcggtagctctactctggttgctgttggaaacttcttttttttatcctacttcttattctagtttagtctgtgtttcatcattcttgctagtaaatataatatatttccgtcattaataaacattgatagaagcattttttgatgcagGTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGATGGGGTCATACGGGATATCGAATTCCGAAAATCAGTGACTGTCAGTATT

Basic information

species Physcomitrella patens
transcript PP1S471_23V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37851868|gb|BJ609876.1|BJ609876
EST:     ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAG                         GTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
genomic: ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAGgttttgtttc ... tttgatgcagGTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
EST: gi|37845125|gb|BJ603133.1|BJ603133
EST:     ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAG                         GTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
genomic: ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAGgttttgtttc ... tttgatgcagGTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
EST: gi|37843561|gb|BJ601569.1|BJ601569
EST:     ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAG                         GTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
genomic: ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAGgttttgtttc ... tttgatgcagGTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
EST: gi|37852808|gb|BJ610816.1|BJ610816
EST:     ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAG                         GTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
genomic: ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAGgttttgtttc ... tttgatgcagGTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
EST: gi|37844600|gb|BJ602608.1|BJ602608
EST:     ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAG                         GTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
genomic: ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAGgttttgtttc ... tttgatgcagGTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
EST: gi|37847741|gb|BJ605749.1|BJ605749
EST:     ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAG                         GTTTGGGNTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
genomic: ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAGgttttgtttc ... tttgatgcagGTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
EST: gi|37848410|gb|BJ606418.1|BJ606418
EST:     ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAG                         GTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
genomic: ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAGgttttgtttc ... tttgatgcagGTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
EST: gi|37843644|gb|BJ601652.1|BJ601652
EST:     ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAG                         GTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA
genomic: ATGACTGATCCAGAAATTTTTGAGCAACGATACCCTGTTCTTTTGCACAGgttttgtttc ... tttgatgcagGTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatataatatatttccgtcattaataaacattgatagaagcattttttgatgcagGTTTGGGCTACGGGCCAATAGTGGTGGCGTTGGAAAACACAGAGGTGGTGATGGGGTCATACGGGATATCGAATTCCGAAAATCAGTGACTGTCAGTATT
                                        catttttt  CT-rich tract
                   attaataaacattgat  TA-rich tract