1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaagagttacgtgattcgtgtattactagtggcattcagaaatactctttatcaatgttcagtaatttaattttttttcgtatgatttttctgctttcagTTCGTGATATGAGCGAAGAAGATGTAGAGAACCTCAATGACCTTGTCGCAGGCAGCTTAACCAGCCCCCAAGATTCGAGGGGACCGGAGAACTCAAATTC
species | Physcomitrella patens |
transcript | PP1S46_84V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTAGTAGGCACTGCCCATCACTCCGACACCAGCAACATCTGTCATGAAG TTCGTGATATGAGCGAAGAAGATGTAGAGAACCTCAATGACCTTGTCGCAGEST: gi|162165699|gb|FC342266.1|FC342266
genomic: AGTAGTAGGCACTGCCCATCACTCCGACACCAGCAACATCTGTCATGAAGgtcatacccc ... ctgctttcagTTCGTGATATGAGCGAAGAAGATGTAGAGAACCTCAATGACCTTGTCGCAG
EST: AGTAGTAGGCACTGCCCATCACTCCGACACCAGCAACATCTGTCATGAAG TTCGTGATATGAGCGAAGAAGATGTAGAGAACCTCAATGACCTTGTCGCAGEST: gi|162196367|gb|FC373552.1|FC373552
genomic: AGTAGTAGGCACTGCCCATCACTCCGACACCAGCAACATCTGTCATGAAGgtcatacccc ... ctgctttcagTTCGTGATATGAGCGAAGAAGATGTAGAGAACCTCAATGACCTTGTCGCAG
EST: AGTAGTAGGCACTGCCCATCACTCCGACACCAGCAACATCTGTCATGAAG TTCGTGATATGAGCGAAGAAGATGTAGAGAACCTCAATGACCTTGTCGCAGEST: gi|162257444|gb|FC433513.1|FC433513
genomic: AGTAGTAGGCACTGCCCATCACTCCGACACCAGCAACATCTGTCATGAAGgtcatacccc ... ctgctttcagTTCGTGATATGAGCGAAGAAGATGTAGAGAACCTCAATGACCTTGTCGCAG
EST: AGTAGTAGGCACTGCCCATCACTCCGACACCAGCAACATTTGTCATGAAG TTCGTGATATGAGCGAAGAAGATGTAGAGAACCTCAATGACCTTGTCGCAG
genomic: AGTAGTAGGCACTGCCCATCACTCCGACACCAGCAACATCTGTCATGAAGgtcatacccc ... ctgctttcagTTCGTGATATGAGCGAAGAAGATGTAGAGAACCTCAATGACCTTGTCGCAG
tctttatcaatgttcagtaatttaattttttttcgtatgatttttctgctttcagTTCGTGATATGAGCGAAGAAGATGTAGAGAACCTCAATGACCTTGTCGCAGGCAGCTTAACCAGCCCCCAAGATTCGAGGGGACCGGAGAACTCAAATTC
atttaat putative branch site (score: 3)
tttttctgctttc putative PPT
agtaatttaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagagttacgtgattcgtgtattactagtggcattcagaaatactctttatcaatgttcagtaatttaattttttttcgtatgatttttctgctttcagTTCGTGATATGAGCGAAGAAGATGTAGAGAACCTCAATGACCTTGTCGCAGGCAGCTTAACCAGCCCCCAAGATTCGAGGGGACCGGAGAACTCAAATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA