1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agctttgacaggatttctacgttgacattgagattggtttcttcccatggttgtttacagggttggctaattccgagttggttgctgacaatctgtgcagGAAGCACCAGAAGGAGTTTAAGGATCAGGAAATGGCAGTGGACTTAACAGACAAACAGTGCCTGGTGACAGGTGCCAATACAGGCATTGGATATGCCTCT
species | Physcomitrella patens |
transcript | PP1S46_64V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGGGGATCTTTCCT GAAGCACCAGAAGGAGTTTAAGGATCAGGAAATGGCAGTGGACTTAACAGAEST: gi|208353889|gb|DC942787.1|DC942787
genomic: GCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGGGGATCTTTCCTgtatgaattc ... atctgtgcagGAAGCACCAGAAGGAGTTTAAGGATCAGGAAATGGCAGTGGACTTAACAGA
EST: GCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGGGGATCTTTCCT GAAGCACCAGAAGGAGTTTAAGGATCAGGAAATGGCAGTGGACTTAACAGAEST: gi|208356778|gb|DC906440.1|DC906440
genomic: GCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGGGGATCTTTCCTgtatgaattc ... atctgtgcagGAAGCACCAGAAGGAGTTTAAGGATCAGGAAATGGCAGTGGACTTAACAGA
EST: GCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGGGGATCTTTCCT GAAGCACCAGAAGGAGTTTAAGGATCAGGAAATGGCAGTGGACTTAACAGAEST: gi|18354047|gb|BJ186102.1|BJ186102
genomic: GCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGGGGATCTTTCCTgtatgaattc ... atctgtgcagGAAGCACCAGAAGGAGTTTAAGGATCAGGAAATGGCAGTGGACTTAACAGA
EST: GCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGGGGATCTTTCCT GAAGCACCAGAAGGAGTTTAAGGATCAGGAAATGGCAGTGGACTTAACAGAEST: gi|18325412|gb|BJ157408.1|BJ157408
genomic: GCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGGGGATCTTTCCTgtatgaattc ... atctgtgcagGAAGCACCAGAAGGAGTTTAAGGATCAGGAAATGGCAGTGGACTTAACAGA
EST: GCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGGGGATCTTTCCT GAAGCACCAGAAGGAGTTTAAGGATCAGGAAATGGCAGTGGACTTAACAGAEST: gi|162189180|gb|FC365987.1|FC365987
genomic: GCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGGGGATCTTTCCTgtatgaattc ... atctgtgcagGAAGCACCAGAAGGAGTTTAAGGATCAGGAAATGGCAGTGGACTTAACAGA
EST: GCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGGGGATCTTTCCT GAAGCACCAGAAGGAGTTTAAGGATCAGGAAATGGCAGTGGACTTAACAGA
genomic: GCTACCTTCGTCTCCTATGGATACATGAACTGGACTCGGGGATCTTTCCTgtatgaattc ... atctgtgcagGAAGCACCAGAAGGAGTTTAAGGATCAGGAAATGGCAGTGGACTTAACAGA
catggttgtttacagggttggctaattccgagttggttgctgacaatctgtgcagGAAGCACCAGAAGGAGTTTAAGGATCAGGAAATGGCAGTGGACTTAACAGACAAACAGTGCCTGGTGACAGGTGCCAATACAGGCATTGGATATGCCTCT
tgctgac putative branch site (score: 4)
ttgttta TA-rich tract