1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaactccccttcctcattgatgtggaccccatcagcaattactaattgtttttcttcccgtcttgttcttgcatttatttcgacgctagtattgacccattggacctttggaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACCCTTGTTCGCGGCCGTGGCGCAAAATACGATTCCAGTGATCACCTTCTTG
species | Physcomitrella patens |
transcript | PP1S46_43V6.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACCEST: gi|18352369|gb|BJ184423.1|BJ184423
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACCEST: gi|100402583|gb|BY954908.1|BY954908
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: GAAATGACTCTNGCGACGTTTGGAAACCTCAATATTCTCGCNNNNNNNGC AATTTTGGGGAAACAGCAATTTTACEST: gi|18354936|gb|BJ186995.1|BJ186995
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTAC
EST: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACCEST: gi|208349978|gb|DC913686.1|DC913686
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACCEST: gi|100390535|gb|BY952943.1|BY952943
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACCEST: gi|100418644|gb|BY957519.1|BY957519
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC AATTTTTGGGGGACCAGCAATTTTTACCTGGCAGGGTTGAAAGCTAACATCEST: gi|100438691|gb|BY961753.1|BY961753
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTT-GGGGAACCAGCAATTTT-ACCTGGCAGGGTTGAA-GCTAACATC
EST: AAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGNC A-TTTTGGGGAACCAGCAATTTTACCTGGCAGGGNTGAAGCTAACATCACEST: gi|208383042|gb|DC915314.1|DC915314
genomic: AAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTG-Cgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCAC
EST: AAAATGACTCTAGCGACGTTTGGAA-CCTCAATATTCTCGCCTTTTTTGC ANTTT-GGGGAACNAGCANTTT-ACCTGGCAGGNT-GAA-CTA-CATCACCEST: gi|100412710|gb|BY974869.1|BY974869
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC AATTTTGGGGAAACAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACCEST: gi|162185617|gb|FC362030.1|FC362030
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: GAAATGACTCTNGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACCEST: gi|100425493|gb|BY958623.1|BY958623
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACCEST: gi|100417350|gb|BY957288.1|BY957288
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC AATTTTGGGGAACCAGCAATCTTACCTGGCAGGGTTGAAGCTAACATCACCEST: gi|100370930|gb|BY968125.1|BY968125
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: AAATGACTCTAGCGACGTTTGGAAACCCTCA-TATTCTCGCCTTTTTTGC NATTTTTGGGGAACCAGCAATTTTACCTGGGCAGGGT-GAAGCTAACATCAEST: gi|100384686|gb|BY950676.1|BY950676
genomic: AAATGACTCTAGCGACGTTTGGAAACC-TCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTT-GGGGAACCAGCAATTTTACCTGG-CAGGGTTGAAGCTAACATCA
EST: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACCEST: gi|100413311|gb|BY956609.1|BY956609
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: AAATGACTCTAGCGACGTTTGGAAACCCTCA-TATTCTCGCCTTTTTTGC AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACCEST: gi|18350799|gb|BJ182850.1|BJ182850
genomic: AAATGACTCTAGCGACGTTTGGAAACC-TCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC AATTTTGGGGAACCAGCAATTTTACCTGEST: gi|100420641|gb|BY993442.1|BY993442
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTG
EST: AAAATGACTCTAGCGACGTTTGGAAACCCCAATATTCTCGCCTTTTTTGC AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACCEST: gi|18351965|gb|BJ184017.1|BJ184017
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
EST: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGC AATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
genomic: AAAATGACTCTAGCGACGTTTGGAAACCTCAATATTCTCGCCTTTTTTGCgtaactcccc ... gaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACC
ttcttgcatttatttcgacgctagtattgacccattggacctttggaccccgcagAATTTTGGGGAACCAGCAATTTTACCTGGCAGGGTTGAAGCTAACATCACCCTTGTTCGCGGCCGTGGCGCAAAATACGATTCCAGTGATCACCTTCTTG
tattgac putative branch site (score: 2)
atttattt TA-rich tract