1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ataccattttctgcataacgtttagtttaaccatttcaggaacagatttactcctctaagctttgaatataattcttcacttcctaactgtatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGACGCTCCATCATGGACCTCCATGACG
species | Physcomitrella patens |
transcript | PP1S46_325V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG GTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGACEST: gi|208344704|gb|DC905153.1|DC905153
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
EST: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG GTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGACEST: gi|162269338|gb|FC444816.1|FC444816
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
EST: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG GTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGACEST: gi|208387810|gb|DC941379.1|DC941379
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
EST: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG GTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGACEST: gi|208379946|gb|DC927672.1|DC927672
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
EST: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG GTCGAAGATTCTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGACEST: gi|18357078|gb|BJ189137.1|BJ189137
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
EST: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG GTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGACEST: gi|162269339|gb|FC444817.1|FC444817
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
EST: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG GTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGACEST: gi|208393393|gb|DC942491.1|DC942491
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
EST: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGG GTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
genomic: TTGCTACTTACAACTGTCAGAGAGTGACCTTGGCTCTCCTAGAGTTCGGGgtatggcttt ... tatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGAC
atttactcctctaagctttgaatataattcttcacttcctaactgtatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGACGCTCCATCATGGACCTCCATGACG
tcctaac putative branch site (score: 1)
tttgaatataattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataccattttctgcataacgtttagtttaaccatttcaggaacagatttactcctctaagctttgaatataattcttcacttcctaactgtatgtaacagGTTGAAGATTTTGAGTTGGTGAAAGTATACTTAAAAGCTGGAGAGCACGACGCTCCATCATGGACCTCCATGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA