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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG

Basic information

species Physcomitrella patens
transcript PP1S45_97V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os11g06890.1 (Oryza sativa), 3'ss of exon 2
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                         |   | ||||| |   |    | |  |  |||||        |  | |  |  |        |  |  | |||||     |  | |  |      ||     ||| ||||||| ||||| ||||| || ||||| |||||||| |||||||| |||||||||||||| || ||||||||| ||||||| || || || ||||| ||| | 
----------------------------------------------------------------------------------------cctcggtgttcatgactac---cctttgtgttgagagcttgaggctactcctaag------ctgcctactttggattacaattctgatatctct--tgttggtgttggcagGGCAAATGCACAGCAACCAAAGCTTTTCGTGGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCCCTGTATGGTCTCATTGTGGGCATCATCCTC

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 2
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                                ||||  | | ||  |   || |   |   |  |   | |  || |     || |  | |     | |     |      | |      ||   |  | ||||||||||| ||||||||||||||| |||| || || |||||||| ||||| ||||| ||||| || |||||| | ||||| || ||||||||||||||| | 
------------------------------------------------------------------------------------------------ttcaaagagttgtcct--agttcgaaaattatattatcaactg-gaacctgtctactctagaccgcaacatctctccgtcctaacacttgttcttttgtgcagGGCGAACGCTCAGCAGCCGAAGTTGTTTGTTGGCATGATCCTCATCCTTATTTTTGCTGAAGCACTTGCCCTCTATGGTCTCATCGTCGGCATTATCCTC

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G028432_T01 (Zea mays), 3'ss of exon 1
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                                  |||    |      |     ||| | |    |  |        ||   |  ||    |  |  ||  |  |  | | | ||     ||   |  |  |||||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| |||||||| ||||| ||| | || || || ||||||||||| ||| | 
--------------------------------------------------------------------------------------------------cacttaaacacttgtcctacttgggaaaatcggattgtcaaccgggctggctgcctagacggcgacatc-tcctcatcctgacacttgttcttttgcgcagGGCGAACGCTCAGCAGCCAAAGCTGTTTGTGGGCATGATCCTCATCCTCATCTTCGCTGAAGCGCTCGCCCTATACGGTCTCATCGTCGGCATCATCCTC

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AC216067.3_FGT002 (Zea mays), 3'ss of exon 2
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                          |      |  |  |||  |        ||| |||| ||||     | |      ||  |||   | || | ||  |  ||  |            | ||  | || |||||||||||| || ||||||||||| || ||||| |||||||| |||||||||||||| || ||||||||  |||| || || || || || |||||| | 
-----------------------------------------------------------------------------------------taatctcctttctttgagcgtttcttcttttaaggaggcagtacatgcttatttgggaattgaaattttattgacttattttctgg----------gccactgatttcagGGCGAATGCACAACAGCCGAAGCTTTTTGTGGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTGTACGGTCTCATTGTTGGAATTATCCTT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgag---gatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggtt--gttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                                      ||     |||||    ||      |  |     |   ||   |  | |    | |  |||    | | |||    |||  |   ||    || || || |||||| ||||| || ||||| ||||| ||||| || |||||||| |||||||||||||| || ||||||||  | ||||| || || || || |||||| | 
-----------------------------------------------------------------------------------------------------agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgactaatttttgggc---caccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 2
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtgga--tgtggttgttaac--gtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                                 || |    |  | ||     ||  |   |  |     | || |       |   |   |||||  |  |||  || ||| |   |   |  |    |||| | |||||||||||| |||||||| ||| |||| ||||| ||||| |||||||| || ||||| || || |||||  |||| || || |||||||| || ||  | 
-------------------------------------------------------------------------------------------------tctcttatacagccaaatttttgcaccttaaacctcaaattata------tccagcccgttgtcaacatgtcattcttatctaattctgatttatgtcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTATCTTCGCAGAAGCTCTTGCTCTGTACGGTCTCATCGTCGGTATCATTCTC

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 2
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                ||| |||   ||     ||  | ||||    ||||  ||     |   | ||| | ||  |      ||||  |  |||   |||         || ||  || |  | || ||||||| || |||||||||||||| ||||| || || || ||||| || ||||||||||| ||||||||| | || || || || || || || ||||| ||| | 
--------------------------------------------------------------------------------atgcatttttagttcactcctgttgat---tatgaattt-----actaatagtaatttaagcttcattttgacgaattgaatatg---------acatgccgg-taac-tcttttgcagAGCAAATGCTCAGCAGCCAAAGCTTTTTGTTGGAATGATACTCATCCTCATTTTTGCTGAGGCGTTGGCATTATACGGTCTCATTGTTGGCATCATCCTC

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA14G23990.1 (Glycine max), 3'ss of exon 2
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                              | ||  |   | |  |  |   |||||    | || ||  |  | ||  | | | |  |    ||   |  |||  | | |    |   ||  | |  ||  |||||| ||||| ||||||||||||||||| || || ||||| || ||| | ||||||||||| || |||||  ||||||| || || || || || ||| | 
---------------------------------------------------------------------------------------------tgcttttctcagctaaat-tatagtttgt---ttcatag--atctatgtaatgttattattaactgaatacttggacgctgagtaaggtaattccttttttgtcagGGCTAATGCCCAGCAGCCGAAGCTGTTTGTTGGTATGATTCTTATCTTGATTTTCGCTGAAGCTCTTGCTCTGTATGGCCTCATTGTGGGTATCATCCTC

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA02G05630.1 (Glycine max), 3'ss of exon 2
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                    |      |  |||||||     | ||       |||    |||    ||   ||  |      |||      |||   |||   |||           | |  | || ||||||| || |||||||||||||| || || || || || ||||| || ||||||||||| ||||||||  | || || ||||| || ||||| ||||| ||| | 
------------------------------------------------------------------------------------acgtcatgttggttcactcctgttgattatgaatttactaatg----gtattttaagcttaattttaacaaattgaatatg-acttgcc---------ggtaac-tcttttgcagAGCAAATGCTCAGCAGCCTAAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAGGCATTGGCATTATATGGTCTCATCGTTGGCATCATCCTC

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT4G34720.1 (Arabidopsis thaliana), 3'ss of exon 2
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgt-tgtggatgtggttgttaacgtggaggatggca--tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                                        | | | |    |   |   | | | || |  | | || |    | |||    | |||     ||||  || || |      | ||   || ||| |||||| |||||||||||||| ||||| || || |||||||| || ||||| |||||||| || ||||||||  | || || || || || || || ||  | 
--------------------------------------------------------------------------------------------------------gtttgtctctcgtcctcctgctactga-tacgctttgaggtattatggaagatatgtaacattggtgtttgacttacccttttgcgattctttttcagGGCAAATGCTCAGCAGCCTAAGCTCTTTGTTGGGATGATTCTTATCCTTATTTTCGCAGAAGCGCTTGCTCTTTACGGGCTTATTGTAGGAATCATTCTT

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatgga-catgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggca--tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                                ||| |   |||| |  || | |   ||  ||    | | | ||||| | |  | |    ||||    || |  || || |   | |   | |    | | |  |||||| |||||||| ||||| ||||| ||||| || ||||| || ||||||||||||||||| || |||||  | || || || |||||||| || || |||
------------------------------------------------------------------------------------------------ttctctaggatgaaatataatggaagaa-atatcaattcaattgtgagtgtctatcccctgtt----atatcatt-ttgatacgcaaatttgtggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT1G75630.1 (Arabidopsis thaliana), 3'ss of exon 2
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                         |||  | | |||  |||||          ||    ||  |   |  ||    | |   ||  |     |||        |||||||  |  |   || | |  ||||||| |||||||| || || ||||||||||| ||||| ||||| ||||| ||||| || || || ||||||||  ||||||| || || || || || ||| | 
----------------------------------------------------------------------------------------acaggcgttgcacc-tgatgctttgttttcttttacatcaactatatgtgacagcatcattcagaactctgtt-------ttgttaatctcaa---tgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT1G75630.2 (Arabidopsis thaliana), 3'ss of exon 3
gtagcggacgaacccttgcaatgtggtgatgtatgggaa---tacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
||| ||          |   || ||||| ||  |  |||   |  | | ||||  |   |||     |   ||        |   | ||||     | |||     |||||          ||    ||  |   |  ||    | |   ||  |     |||        |||||||  |  |   || | |  ||||||| |||||||| || || ||||||||||| ||||| ||||| ||||| ||||| || || || ||||||||  ||||||| || || || || || ||| | 
gtaacgttgtttgatattagatttggtgttggttaagaactgtctggattgaatctttgaagcagattaggataaattaccagtagaattcaacaggcgttgcacctgatgctttgttttcttttacatcaactatatgtgacagcatcattcagaactctgtt-------ttgttaatctcaa---tgtcttattttgcagAGCGAATGCGCAACAACCGAAGCTGTTTGTGGGAATGATTCTGATTCTCATCTTTGCGGAAGCGCTTGCACTGTATGGTCTCATTGTTGGTATCATCCTC

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv18s0001g13630.t01 (Vitis vinifera), 3'ss of exon 2
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                     |||  |   || |  | |   | | | |    |||    |     | | | || |        ||  | |  | |    ||   | ||    || |   | |     ||||||| || |||||||||||||| ||||| ||||| || |||||||| || ||||| || ||||| || |||||| |||||||||| || || ||||| ||| | 
------------------------------------------------------------------------------------tttcatattaggatttctgcctttgcctt----ttt----acatctattcaattcta-------tttatttcctttaagagtatgtttttgtctgaattgttgttatatttgcagAGCCAATGCTCAGCAGCCAAAGCTTTTCGTTGGAATGATCCTCATTCTCATCTTTGCTGAAGCTCTTGCCCTGTATGGACTTATTGTTGGCATCATCCTA

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EDP08338 (Chlamydomonas reinhardtii), 3'ss of exon 3
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagt-tgtgggagggtttggtgtgttgtggatgtggt-tgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                                                                   || ||| |  |      | |   |  || | | |   |  | |||||   |    |  | | | |||||| || || || ||||| || ||||||||||| || ||||| ||||| || ||||||||||||||||| ||  | || || ||||| |              
-----------------------------------------------------------------------------------------------------------------------------------gtaagtctacgcagccttctcaggcattttaggttcagagtattaac-cagtccttttcctggcttgcagCGCTAACGCCCAGCAACCCAAGCTGTTCGTCGGTATGATTCTGATTCTGATTTTCGCTGAGGCGCTCGCTCTTTACGGCCTGATTG--------------

upper sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 2
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatggacatgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                                                                                                                              | |   |   | |    |        | | |  | ||| |     || |      |  ||   |  |||||||||||||||| ||||| || ||||| || || || ||||||||||| ||||| || || |||||  | ||  | || || || || || || || ||| ||
------------------------------------------------------------------------------------------------------------------------------gtaagttcgatcgatcaaaaaccatctttttcttcgatatctccattgatt---ggtttgtttttctttgcagGGCGAATGCGCAGCAACCCAAGCTTTTTGTTGGAATGATCCTGATTCTCATCTTTGCCGAGGCTTTGGCTCTATACGGTCTCATTGTGGGAATCATCCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208350047|gb|DC910282.1|DC910282
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|208373987|gb|DC944720.1|DC944720
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|208400226|gb|DC908887.1|DC908887
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|7648085|gb|AW739068.1|AW739068
EST:     TGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: TGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|162206391|gb|FC383384.1|FC383384
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|67692157|gb|BJ952390.1|BJ952390
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|67507827|gb|BJ940704.1|BJ940704
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|100432293|gb|BY960411.1|BY960411
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|100352656|gb|BY945381.1|BY945381
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|19790121|gb|BQ041643.1|BQ041643
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGNTGGG
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCG-TGGG
EST: gi|162206392|gb|FC383385.1|FC383385
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|67718832|gb|BJ969091.1|BJ969091
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|100372520|gb|BY985638.1|BY985638
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|67568945|gb|BJ941769.1|BJ941769
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|208386035|gb|DC956551.1|DC956551
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|208355821|gb|DC930184.1|DC930184
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|208388958|gb|DC932986.1|DC932986
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|208384228|gb|DC919700.1|DC919700
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGGATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|18354664|gb|BJ186722.1|BJ186722
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|208348535|gb|DC905814.1|DC905814
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGGATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|18351281|gb|BJ183333.1|BJ183333
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAG
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAG
EST: gi|100417075|gb|BY957154.1|BY957154
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|208378908|gb|DC922754.1|DC922754
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|208394872|gb|DC924119.1|DC924119
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGNGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCNTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|37829504|gb|BJ587516.1|BJ587516
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|37830631|gb|BJ588643.1|BJ588643
EST:     GAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCNTCAT
genomic: GAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
EST: gi|67575975|gb|BJ948799.1|BJ948799
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAN                         GGCGAATGCTCAG
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAG
EST: gi|37829531|gb|BJ587543.1|BJ587543
EST:     GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAG                         GGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT
genomic: GGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 29 (downstream exon)
Score: 13

TGTTTGACGGCTACGCGCATCTTTCATCGGGATTGTCTTGCGGGTTGGCAGGACTGTCGGCAGGCATGGCCATCGGTATCGTTGGAGATGCTGGTGTGAGgtagcggacg ... tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggtttggtgtgttgtggatgtggttgttaacgtggaggatggcatcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG
                         tgttaac  putative branch site (score: 13)
                        ttgttaa  TA-rich tract