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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttctctactcttccgcatcgctttcaaaatatagcttctatttcaagaaaataaacccgtaagccgtatcgacttgttgttttggttttgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAGGCCAGGCGAAAGAACGTAGGAGGCAAGGTCCTTGGCTTCTTTTACTGAG

Basic information

species Physcomitrella patens
transcript PP1S45_88V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S45_88V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G083497_T04 (Zea mays), 3'ss of exon 2
gtttctctactcttccgcatcgctttcaaaat-atagcttctatttcaagaaaataaacccgtaagccgtatcgacttgttgttttggttttgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAGGCCAGGCGAAAGAACGTAGGAGGCAAGGTCCTTGGCTTCTTTTACTGAG
            |  |   | | | || | || || |  |  |||       | |      ||  | |   |  | | ||   | || | || |  || ||||||| || || ||| | ||||| || || || |||||||||||||| |||||| | || |||||||| |||||||| |||||||| |||||||| | | 
----------gttagcctgttgttgtctatatcatgggctgcatt-------attttgtatgttggactctttaagtggtaactgtgctcttata-tgtagTTTGGCTATATCGTGCTTACAACCTCTGCGGGAATTATGGATCACGAGGAGGCCCGACGCAAGAACGTCGGAGGCAAAGTCCTTGGTTTCTTTTATTAAT

upper sequence: PP1S45_88V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA15G10950.1 (Glycine max), 3'ss of exon 3
gtttctctactcttccgcatc----gctttcaaaatatagcttctatttcaagaaaataaacccgtaagccgtatcgacttgttgttttggttttgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAGGCCAGGCGAAAGAACGTAGGAGGCAAGGTCCTTGGCTTCTTTTACTGAG
 ||   ||  |   | | |||      |||  ||  || |  |    ||   | | | |    |    |  |   | |    ||||||        || |||||||||| || |||||| |||| || ||||||||||| |||||||| || || || ||| ||||||| || |                              
attaagctggtgc-ctgtatcctaaattttttaatcatggtataggcttt--gtacacagtttccattgttgaccctaacctttgtttacacaa-atgttgcagTTTGGGTATATTGTGTTGACTACCTCAGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAGAATGTTG------------------------------

upper sequence: PP1S45_88V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA01G45060.1 (Glycine max), 3'ss of exon 3
---gtttctctactcttccgcatcgctttcaaaatatagcttctattt-caagaaaataaacccgtaagccgtatcgacttgttgttttggttttgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAGGCCAGGCGAAAGAACGTAGGAGGCAAGGTCCTTGGCTTCTTTTACTGAG
      | |||    ||   | |    ||     |    ||  | |   ||      |   || ||  |||   |  ||||  || || | |      | |||||||||||| |||||  ||||||| || ||||| || |||||||| || ||||| ||| ||||||| || || || || ||  | || ||||| ||||  |
ctaacctatctgtgattaaactttatgttgtccgttattctcttgtgcgcatatggtttctcctgtttgcccc-taaactt--tgatt-gctcaaaatgcgcagTTTGGTTATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAGG

upper sequence: PP1S45_88V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT5G59850.1 (Arabidopsis thaliana), 3'ss of exon 3
gtttctctactcttccgcatcgctttcaaaatatagcttctatttca-agaaaataaacccgtaagccgtatcgacttgttgttttggttttgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAGGCCAGGCGAAAGAACGTAGGAGGCAAGGTCCTTGGCTTCTTTTACTGAG
     |||  ||||     ||   |||| | | | | |    |||   | | |  || |   ||  | ||         |||  ||  ||   | ||||||||||| ||||||||  | || || || ||||| |||||||| ||||| || |||||| ||||||| || || |||||||| |||||||||||||||||| 
----gtctg-tcttttaagtcttgttcatattttggttctggttttttaaagagcaatcttatattcagtgatcttacattgagttc-ttaaattgtgcagTTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAGCCAGGAGAAAGAATGTTGGTGGCAAGGTTCTTGGCTTCTTTTACTGAA

upper sequence: PP1S45_88V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT3G46040.1 (Arabidopsis thaliana), 3'ss of exon 3
------------------------------------------------------------gtttctctactcttcc--gcatcgctt---tcaaaatatagcttc--tatttcaagaaaataaacccgtaagccgtatcgacttgttgttttggttttgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAGGCCAGGCGAAAGAACGTAGGAGGCAAGGTCCTTGGCTTCTTTTACTGAG
                                                             || || | || ||||    || | ||   |  |  | |||  ||  || ||      | |  | |  | |    ||     |  |||      | |    ||||||||||||| ||||||  |||| || ||||| || || |||||||| || || || ||| |||||||||| || ||||| || ||||| |||||||||||| 
gttagtctagagactatatagtagtggtaccaatcaatgttttagctattgatctgctgccttactttgctgttcctattatggtttaattggatgtttagtgtcattactttgccttactttatctttcaatgttacaacttcattgaacacttctctatgtgcagTTTGGTTTCATTGTTCTGACGACCTCAGCGGGAATCATGGATCATGAAGAAGCTAGGAGAAAGAACGTTGGTGGCAAAGTTCTTGGGTTCTTTTACTGAA

upper sequence: PP1S45_88V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT1G07770.1 (Arabidopsis thaliana), 3'ss of exon 3
-------------------------------------------------------------------gtttctctactcttccgcat-cgctttcaaaatatagcttctatttcaagaaaataa-acccgtaagccgtatcgacttgttgttttggttttgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAGGCCAGGCGAAAGAACGTAGGAGGCAAGGTCCTTGGCTTCTTTTACTGAG
                                                                   |||| |  |    |  |||| |  |  | ||| ||   |  || |         |||  | ||  |   ||||  |    |||      ||   | ||||||||||||||||| ||| |||| || || |||||||||||||| || || || || ||  | ||||| || ||||||||||| || |||||||| || ||| 
gttcgctcttcttataaactttctagttacagtggccttatgaattataagatcaagatttggaaatgtttttgaatcactttgcatactgtcccgaaacatcaatagtagtagctttgtttaatgctcgctaatggtattaatggattgaagctattaaattgtgcagTTTGGTTACATCGTGCTGACTACATCTGCTGGCATTATGGACCATGAAGAAGCTAGAAGGAAGAATGTTGGAGGCAAGGTTCTCGGCTTCTTCTATTGAA

upper sequence: PP1S45_88V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ14550 (Selaginella moellendorffii), 3'ss of exon 2
gtttctctactcttccgcatcgctttcaaaatatagcttctatttcaagaaaataaacccgtaagccgtatcgacttgttgttttggttttgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAGGCCAGGCGAAAGAACGTAGGAGGCAAGGTCCTTGGCTTCTTTTACTGAG
                |  |   ||| | |    |     |   |      ||  ||          ||| ||| |  || | || | | | |||  |||||||||||||||||| ||||||| ||  | || || ||||||||||| || || ||| | ||||| || || ||||||||||| |||||||| || ||| 
----------------gtttgattttgagagacgaatcgatggcttggtgcaaagaa----------gtaacgatt--ttctcttcgatctctggctcagTTTGGTTACATTGTGCTGACAACATCGTCCGGTATCATGGATCACGACGAAGCGAGGAGGAAGAATGTTGGTGGCAAGGTCCTCGGCTTCTTCTATTGAT

upper sequence: PP1S45_88V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ26253 (Selaginella moellendorffii), 3'ss of exon 2
gtttctctactcttccgcatcgctttcaaaatatagcttctatttcaagaaaataaacccgtaagccgtatcgacttgttgttttggttttgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAGGCCAGGCGAAAGAACGTAGGAGGCAAGGTCCTTGGCTTCTTTTACTGAG
                |  |   ||| | |    |     |   |      ||  |||          || ||| |  || | || | | | |||  |||||||| ||||||||| ||||||| ||  |||| || ||||||||||| || || ||| | ||||| || || ||||||||||| |||||||| || ||| 
----------------gtttgattttgagagacgaatcgatggcttggtgcaaagaac----------taacgatt--ttctcttcgatctctggctcagTTTGGCTACATTGTGCTGACAACATCGTCTGGTATCATGGATCACGACGAAGCGAGGAGGAAGAATGTTGGTGGCAAGGTCCTCGGCTTCTTCTATTGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22132501|gb|BQ827193.1|BQ827193
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|19784412|gb|BQ040171.1|BQ040171
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|19789595|gb|BQ041399.1|BQ041399
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|7207482|gb|AW561483.1|AW561483
EST:     AGTTGGTGAGCTT-ACAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: AGTTGGTGAGCTTGA-AGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162271135|gb|FC447150.1|FC447150
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162227556|gb|FC403498.1|FC403498
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162209152|gb|FC385371.1|FC385371
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|67507539|gb|BJ940421.1|BJ940421
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162236677|gb|FC413772.1|FC413772
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162253265|gb|FC429201.1|FC429201
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|22133183|gb|BQ827593.1|BQ827593
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162227555|gb|FC403497.1|FC403497
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162276443|gb|FC452667.1|FC452667
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162231416|gb|FC406839.1|FC406839
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162253779|gb|FC429893.1|FC429893
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|67695283|gb|BJ955516.1|BJ955516
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|67569579|gb|BJ942403.1|BJ942403
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162231116|gb|FC406227.1|FC406227
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162268680|gb|FC445177.1|FC445177
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|67576849|gb|BJ949673.1|BJ949673
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|67692847|gb|BJ953080.1|BJ953080
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162231115|gb|FC406226.1|FC406226
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|67578807|gb|BJ950974.1|BJ950974
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162253264|gb|FC429200.1|FC429200
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|19776297|gb|BQ039062.1|BQ039062
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|22492164|gb|BU052087.1|BU052087
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162271134|gb|FC447149.1|FC447149
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|67571916|gb|BJ944740.1|BJ944740
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162268679|gb|FC445176.1|FC445176
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162264626|gb|FC441208.1|FC441208
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|208350412|gb|DC906114.1|DC906114
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162264625|gb|FC441207.1|FC441207
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|208395465|gb|DC919999.1|DC919999
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162219274|gb|FC395270.1|FC395270
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162253778|gb|FC429892.1|FC429892
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|19783429|gb|BQ040007.1|BQ040007
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|22492548|gb|BU052471.1|BU052471
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|37848235|gb|BJ606243.1|BJ606243
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACNTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|162276442|gb|FC452666.1|FC452666
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
EST: gi|22131806|gb|BQ826816.1|BQ826816
EST:     GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAG                         TTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 31 (downstream exon)
Score: 48

TAATGGCAGGTTGAACAAGTGCGGTGTCATCAGTCCCCGTTACAACGTGGGAGTTGGTGAGCTTGAAGCTTGGACTGCTCGGCTCCTACCTTCTCGCCAGgtttgtggtt ... tgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAGGCCAGGCGAAAGAACGTAGGAGGCAAGGTCCTTGGCTTCTTTTACTGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagaaaataaacccgtaagccgtatcgacttgttgttttggttttgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAGGCCAGGCGAAAGAACGTAGGAGGCAAGGTCCTTGGCTTCTTTTACTGAG
     aaataaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttctctactcttccgcatcgctttcaaaatatagcttctatttcaagaaaataaacccgtaagccgtatcgacttgttgttttggttttgtggtgcagTTTGGTTACATTGTGATGACAACGTCAGCTGGCATTATGGATCACGATGAGGCCAGGCGAAAGAACGTAGGAGGCAAGGTCCTTGGCTTCTTTTACTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC