Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208393883|gb|DC938466.1|DC938466EST: TGATGGAATGCCGAATGTGAACATGGAATGCAGTGTCGAAGATAGCGTAG GGTCGATGTCGGTTTTAGTCAGTTGTTAGTGGTTGGACTGGGTGAGGCAGC
genomic: TGATGGAATGCCGAATGTGAACATGGAATGCAGTGTCGAAGATAGCGTAGgcatatttca ... tgtgtaacagGGTCGATGTCGGTTTTAGTCAGTTGTTAGTGGTTGGACTGGGTGAGGCAGC
EST:
gi|208363849|gb|DC943306.1|DC943306EST: TGATGGAATGCCGAATGTGAACATGGAATGCAGTGTCGAAGATAGCGTAG GGTCGATGTCGG-TTTAGTCAGTTGTTAGTGGTTGGACTGGGTGAGGCAGC
genomic: TGATGGAATGCCGAATGTGAACATGGAATGCAGTGTCGAAGATAGCGTAGgcatatttca ... tgtgtaacagGGTCGATGTCGGTTTTAGTCAGTTGTTAGTGGTTGGACTGGGTGAGGCAGC
EST:
gi|67717091|gb|BJ967350.1|BJ967350EST: TGATGGAATGCCGAATGTGAACATGGAATGCAGTGTCGAAGATAGCGTAG GGTCGATGTCGGTTTTAGTCAGTTGTTAGTGGTTGGACTGGGTGAGGCAGC
genomic: TGATGGAATGCCGAATGTGAACATGGAATGCAGTGTCGAAGATAGCGTAGgcatatttca ... tgtgtaacagGGTCGATGTCGGTTTTAGTCAGTTGTTAGTGGTTGGACTGGGTGAGGCAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgaatatcgttggaatttatacgagactaactcatcatggattgctgtgtaacagGGTCGATGTCGGTTTTAGTCAGTTGTTAGTGGTTGGACTGGGTGAGGCAGCCGCTAAATATTTGTGGAAGTGACGGATTTTTCATTGTTGACGAACGAAT
gactaac putative branch site (score: 1)
aatttata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catttcatgtctaactagatagcaactctttctttgtgggctcttcgaatatcgttggaatttatacgagactaactcatcatggattgctgtgtaacagGGTCGATGTCGGTTTTAGTCAGTTGTTAGTGGTTGGACTGGGTGAGGCAGCCGCTAAATATTTGTGGAAGTGACGGATTTTTCATTGTTGACGAACGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG