Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaattcctttgacctcagtataggattttatcattgacaccacttctgtttggttgcgcaatggattagttgtgatttgcacttacatggcggaaagccattagttacagataaagggcttgaacgaatgtctggttccactccggtgcatggactaatacttctttgttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGATCACAGACGCAAGAACCGATGCTTGGAGAGCCTTCAGGAGAATGTGAACC

Basic information

species Physcomitrella patens
transcript PP1S459_9V6.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S459_9V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G145280_T01 (Zea mays), 3'ss of exon 3
gtatgaattcctttgacctcagtataggattttatcattgacaccacttctgtttggttgcgcaatggattagttgtgatttgcacttacatggcggaaagccattagttacagataaagggcttgaacgaatgtctg-gttccactccggtgcatggactaatacttctttgttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGATCACAGACGCAAGAACCGATGCTTGGAGAGCCTTCAGGAGAATGTGAACC
                                                                               | |||| |||         ||     |  |||    | |     || | |||   |||| |||  |    | |||       ||   | || ||||| |  ||||||||||| ||||| ||||| ||||| || || ||||||||| ||||||||||| | |||||||||  || | | ||| | || ||||  |||||  |  
------------------------------------------------------------------------------ttctgcatttatccttgttgaattatcttcttatgagtcacacttttcatcgatgatctgtgttatatcttgatgc-----taaaagttactatgttgattgcagGCTGCTGGCATCCCAAAGAAGCTTGCTCCAACCATTGGTATTTCTGTTGATCACCGCCGCAAGAACAAATCCCTTGAGGGACTGCAGGCCAATGTCCAGA

upper sequence: PP1S459_9V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA16G17370.2 (Glycine max), 3'ss of exon 2
gtatgaattcctttgacctcagtataggattttatcattgacaccacttctgtttggttgcgcaatggattagttgtgatttgcacttacatggcggaaagccattagttacagataaagggcttgaacgaatgtctggttccactccggtgcatggactaatacttctttgttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGATCACAGACGCAAGAACCGATGCTTGGAGAGCCTTCAGGAGAATGTGAACC
                                                                       ||||  ||   |||  |||||     |||||  |     |||  || |     |      || |||  || |   | |    |  ||||||| ||| | | |   ||  ||||||| ||||| |||||||||||||| || || ||||| ||| ||||||||||| |  | ||||| || |  |||||||| || ||||  |||||| |  
----------------------------------------------------------------------aagttaagaca-gcaaatacataa--aaaagctgtctaaaacat-tagaaattcttcctttatatct--tttcttcctg----acagactaattcttttatat--atcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATCACCGCAGAAAGAATCGTTCTTTGGAGAGTCTGCAGGCCAATGTGCAGA

upper sequence: PP1S459_9V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA04G14640.2 (Glycine max), 3'ss of exon 3
gtatgaattcctttgacctcagtataggattttatcattgacaccacttctgtttggttgcgcaatggattagttgtgatttgcacttacatggcggaaagccattagttac-agataaagggcttgaacgaatgtctggttccactccggtgcatggactaatacttctttgttg-gtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGATCACAGACGCAAGAACCGATGCTTGGAGAGCCTTCAGGAGAATGTGAACC
                                                                            |  |  ||| |||  |     |||   |  |  | | | | |   |   ||     |  | || |||   |    || ||           ||| | ||  | |  |||| || || || ||||| || ||||| || |||||||||||||||||||||||  | ||||||||||| |  ||||| || || || |  |||||| |  
---------------------------------------------------------------------------attttaagcatttatttattataaaatgaaaatatgctaaacatgagttctgcttttagatatgtttctgatattatgtat---------tctctatattatgccatagGCAGCAGGGATTCCCAAAAAGCTTGCACCAACAATTGGTATTGCTGTTGATCATCGCCGCAAGAACCGTTCTTTGGAAAGTCTGCAAGCTAATGTGCAGA

upper sequence: PP1S459_9V6.3 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT3G49010.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatgaattcctttgacctcagtataggattttatcattgacaccacttctgtttggttgcgcaatggattagttgtgatttgcacttacatggcggaaagccattagttacagataaagggcttgaacgaatgtctggttccactccggtgcatggactaatacttctttgttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGATCACAGACGCAAGAACCGATGCTTGGAGAGCCTTCAGGAGAATGTGAACC
                                                                      | |||||||||     ||  |    |        ||  ||||   ||  ||  |       |||| |  || |   | |   ||| ||    |  || |||| |      |||||||||| ||||| |||||  | || ||||||||||||||||||||||| ||  | |||||||||||||  |||||| | |||||    |||||  |  
----------------------------------------------------------------------ttgttgtgattgttgattgaaattggctggatttttctttac---tatcggtatc------atgtttcatttcttgctga-acattgatc--tgattgtttgattaatatagGCTGCTGGTATCCCAAAGAAGTTGGCGCCTACAATTGGTATTGCTGTTGACCATCGTCGCAAGAACCGATCTTTGGAGGGTCTTCAAACAAATGTCCAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162229258|gb|FC405345.1|FC405345
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162272675|gb|FC448301.1|FC448301
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162265436|gb|FC440762.1|FC440762
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|208366490|gb|DC954826.1|DC954826
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|6102402|gb|AW126872.1|AW126872
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|208395785|gb|DC920291.1|DC920291
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67727928|gb|BJ978187.1|BJ978187
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18336214|gb|BJ168236.1|BJ168236
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|37851300|gb|BJ609308.1|BJ609308
EST:     TAACGCCAAGATTTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: TAACGCCAAGA-TTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18373736|gb|BJ205314.1|BJ205314
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18326513|gb|BJ158512.1|BJ158512
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67571629|gb|BJ944453.1|BJ944453
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|208382584|gb|DC923212.1|DC923212
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162272674|gb|FC448300.1|FC448300
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67694980|gb|BJ955213.1|BJ955213
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67696492|gb|BJ956725.1|BJ956725
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67570210|gb|BJ943034.1|BJ943034
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18334570|gb|BJ166587.1|BJ166587
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162240647|gb|FC416278.1|FC416278
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTCCAATTGGTATTGCTGTGGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162274139|gb|FC450211.1|FC450211
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162204084|gb|FC379453.1|FC379453
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162215362|gb|FC391858.1|FC391858
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67693479|gb|BJ953712.1|BJ953712
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162274140|gb|FC450212.1|FC450212
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162259517|gb|FC435444.1|FC435444
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|37844223|gb|BJ602231.1|BJ602231
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|208356746|gb|DC906408.1|DC906408
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|208391982|gb|DC941830.1|DC941830
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162265435|gb|FC440761.1|FC440761
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|15727679|gb|BI740410.1|BI740410
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18360219|gb|BJ192281.1|BJ192281
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18336144|gb|BJ168166.1|BJ168166
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGTCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162275611|gb|FC451327.1|FC451327
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|19779128|gb|BQ039406.1|BQ039406
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|67719664|gb|BJ969923.1|BJ969923
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162204085|gb|FC379454.1|FC379454
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162259518|gb|FC435445.1|FC435445
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162225650|gb|FC401792.1|FC401792
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162240648|gb|FC416279.1|FC416279
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACCATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|208347049|gb|DC909347.1|DC909347
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18334507|gb|BJ166524.1|BJ166524
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162275612|gb|FC451328.1|FC451328
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|37833943|gb|BJ591955.1|BJ591955
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|18334613|gb|BJ166630.1|BJ166630
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAATTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162208270|gb|FC384374.1|FC384374
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|37853583|gb|BJ611591.1|BJ611591
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162215361|gb|FC391857.1|FC391857
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
EST: gi|162229259|gb|FC405346.1|FC405346
EST:     ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAG                         GCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT
genomic: ATAACGCCAAGATTCGTGCTGGACGCGGTTTTACTTTGGAGGAGTTGAAGgtatgaattc ... ttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgaatgtctggttccactccggtgcatggactaatacttctttgttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGATCACAGACGCAAGAACCGATGCTTGGAGAGCCTTCAGGAGAATGTGAACC
                             gactaat  putative branch site (score: 2)
                                     cttctttgtt  CT-rich tract
                                taatactt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgaattcctttgacctcagtataggattttatcattgacaccacttctgtttggttgcgcaatggattagttgtgatttgcacttacatggcggaaagccattagttacagataaagggcttgaacgaatgtctggttccactccggtgcatggactaatacttctttgttggtctcagGCTGCTGGAATCCCCAAGAAACTTGCCCCTACAATTGGTATTGCTGTTGATCACAGACGCAAGAACCGATGCTTGGAGAGCCTTCAGGAGAATGTGAACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA