Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttgatcgttctggcggcttagagtgggagagatttagggtttttgtgcgggtggagtttgagtaggaagcgaatgtgtttttttttttttttttttttttttttaaattattctttaacttggtcttgaggattgactgttcgatcttgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTTTCCAGTTTCCGGAGGGCACCGTTGAGTTGTATGCCGAGAAGGTGAACAA

Basic information

species Physcomitrella patens
transcript PP1S454_3V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S454_3V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G099352_T04 (Zea mays), 3'ss of exon 1
gtacgttgatcgttctggcggcttagagtgggagagatttagggtttttgtgcgggtggagtttgagtaggaagcgaatgtgtttttttttttttttttttttttttttaaattattctttaacttggtcttgaggattgactgttcgatcttgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTTTCCAGTTTCCGGAGGGCACCGTTGAGTTGTATGCCGAGAAGGTGAACAA
                                                                  |   |||| |   ||    |        |    |   |  |  | |  |   || |||||   | |||| || |   |||     || ||  |     |        ||| || || | |   |  |    |  |        |||| | || | |  |  |||   |  |    | |                  
------------------------------------------------------------------gcgagaag-ggccgtaggatcagggagctcacctccgtcgtccagaagagg-ttcaactt--ccctgagaatgg--cgttgagctttatgccgagaaggtcgtcaaCCGTGGGCTCTGTGCCATCGCGCAGGCCGAGTCCCTCCGTTACAAGCTCCTCGGTGGCCTTGCCGT-CCGCAG-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18332160|gb|BJ164173.1|BJ164173
EST:     CCGTGCCACTCGNACCCATAACGTGTTGG                         GTGAGAAGGGACGTANGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18366824|gb|BJ198904.1|BJ198904
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18349939|gb|BJ181990.1|BJ181990
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18364872|gb|BJ196945.1|BJ196945
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18361517|gb|BJ193583.1|BJ193583
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18355674|gb|BJ187733.1|BJ187733
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162239612|gb|FC416868.1|FC416868
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|67703308|gb|BJ963541.1|BJ963541
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|19790024|gb|BQ041654.1|BQ041654
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|67704629|gb|BJ964862.1|BJ964862
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18328399|gb|BJ160404.1|BJ160404
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18348535|gb|BJ180584.1|BJ180584
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162234787|gb|FC409273.1|FC409273
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18362282|gb|BJ194352.1|BJ194352
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18366022|gb|BJ198100.1|BJ198100
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|67703786|gb|BJ964019.1|BJ964019
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18331036|gb|BJ163042.1|BJ163042
EST:     GCCACTCGCACCCANAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: GCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18362603|gb|BJ194674.1|BJ194674
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18361780|gb|BJ193847.1|BJ193847
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18366162|gb|BJ198240.1|BJ198240
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18363366|gb|BJ195438.1|BJ195438
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18368961|gb|BJ201046.1|BJ201046
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCA
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCA
EST: gi|18331691|gb|BJ163702.1|BJ163702
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162245549|gb|FC424103.1|FC424103
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162221281|gb|FC398091.1|FC398091
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162267185|gb|FC442597.1|FC442597
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162230385|gb|FC406949.1|FC406949
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|67698406|gb|BJ958639.1|BJ958639
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18353697|gb|BJ185752.1|BJ185752
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAG
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAG
EST: gi|18330053|gb|BJ162059.1|BJ162059
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18326908|gb|BJ158908.1|BJ158908
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162274010|gb|FC450357.1|FC450357
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162274011|gb|FC450358.1|FC450358
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|208393090|gb|DC929585.1|DC929585
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|67574976|gb|BJ947800.1|BJ947800
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18325037|gb|BJ157033.1|BJ157033
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|208355655|gb|DC929933.1|DC929933
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCANAACGTGTTGG                         GTGAGAAGGGACGTANGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|100399202|gb|BY954251.1|BY954251
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|100400230|gb|BY954373.1|BY954373
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18350200|gb|BJ182251.1|BJ182251
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162242773|gb|FC416412.1|FC416412
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162209056|gb|FC385608.1|FC385608
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162247731|gb|FC423389.1|FC423389
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|100370712|gb|BY948478.1|BY948478
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162245548|gb|FC424102.1|FC424102
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18350797|gb|BJ182848.1|BJ182848
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|37842073|gb|BJ600081.1|BJ600081
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162247730|gb|FC423388.1|FC423388
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTT-G                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18343042|gb|BJ175079.1|BJ175079
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162209055|gb|FC385607.1|FC385607
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|162221282|gb|FC398092.1|FC398092
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18329924|gb|BJ161930.1|BJ161930
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
EST: gi|18355633|gb|BJ187692.1|BJ187692
EST:     CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGG                         GTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT
genomic: CATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 84

CGGGAGCTTGCTGAAGATGGGTACTCTGGCGTGGAAGTGCGCGTCACTCCCATGCGTACCGAGATCATCATCCGTGCCACTCGCACCCAGAACGTGTTGGgtacgttgat ... tgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTTTCCAGTTTCCGGAGGGCACCGTTGAGTTGTATGCCGAGAAGGTGAACAA




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaattattctttaacttggtcttgaggattgactgttcgatcttgtgatgcagGTGAGAAGGGACGTAGGATCAGGGAGTTGACCTCCGTTGTCCAGAAGCGTTTCCAGTTTCCGGAGGGCACCGTTGAGTTGTATGCCGAGAAGGTGAACAA
                            gattgac  putative branch site (score: 84)
     ttattctttaactt  TA-rich tract