Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggcccactggaagctctatgtgttgtgtggtgtgtaatggcacatttttgggtttagtcgaagttagggttttgttggaggacggagctgaggttcgatggttttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAGACTATCTTCGTGTTCGGGTTCAGGACCCAGTTTGGAGGTGGCAAGTCCA

Basic information

species Physcomitrella patens
transcript PP1S450_9V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os01g52490.1 (Oryza sativa), 3'ss of exon 2
gtgagtggcccactggaagctctatgtgttgtgtggtgtgtaatggcacatttttgggtttagtcgaagttagggttttgttggaggacggagctgaggttcgatggtttt--cactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAGACTATCTTCGTGTTCGGGTTCAGGACCCAGTTTGGAGGTGGCAAGTCCA
                                |||     |    | | || ||    | | || |  || | | |||    || |   ||| || ||   |   ||||||      ||||||||||||||||||||||| || |||||||||||||||  |||  |  |    ||||||||||||  |||| | ||||| || || || ||||||||||
--------------------------------gtgagacctcggtgtaaatctt-acatgtggtggtggtgatgatttgcggggggtttggatctcagcggctggggttttgctgtgcagGCTGAGCTGAAGGAGAAGCTGGCCAAGCTGTACGAGGTGAAGGACGCGAACTGCATCTTCGTGTTCAAGTTCCGCACCCACTTCGGTGGAGGCAAGTCCA

upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os06g36160.1 (Oryza sativa), 3'ss of exon 1
gtgagtggcccactggaagctctatgtgttgtgtggtgtgtaatggcacatttttgggtttagtcgaagttagggttttgttggaggacggagctgaggttcgatggttttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAGACTATCTTCGTGTTCGGGTTCAGGACCCAGTTTGGAGGTGGCAAGTCCA
                              ||| | |  ||   ||         | ||   |  || |  ||||       |   | | || | |  ||    ||    |    ||||| || |||||||||||||| ||||||||||||||||||  |||  || |    ||||||||||||  |||| | ||||| || ||||| ||||||||||
------------------------------gtgcgtttcgtttagggtttcgcccgcgtgagggtgaggggagggggagagagcgaggctgatccgctgtattgtgcgcgttgtgcagGCGGATCTGAAGGAGAAGCTGGCGAAGCTGTACGAGGTGAAGGACTCCAACTGCATCTTCGTGTTCAAGTTCCGCACCCACTTCGGAGGCGGCAAGTCCA

upper sequence: PP1S450_9V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: LOC_Os02g13530.1 (Oryza sativa), 3'ss of exon 1
gtgagtggcccactggaagctctatgtgttgtgtggtgtgtaatggcacatttttgggtttagtcgaagttagggtttt--gttggagg-acggagctgagg--------ttcgatggttttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAGACTATCTTCGTGTTCGGGTTCAGGACCCAGTTTGGAGGTGGCAAGTCCA
                              ||| |  | ||  |    |   |  ||     |||   | ||||||||   |  |  ||   |  ||| | |        | ||   |  |     ||||| || |||||||||||||| ||||||||||||||||||  |||  || |    ||||||||||||  |||| | ||||| || ||||| ||||||||||
------------------------------gtgcgtcgcgtcctcctcctcctccggtgaccgtccgggctagggtttcccgccgccggcgtgaggctcatgcgtgcgtgtgcgtgtgcgtgtgtgcagGCGGATCTGAAGGAGAAGCTGGCGAAGCTGTACGAGGTGAAGGACTCCAACTGCATCTTCGTGTTCAAGTTCCGCACCCACTTCGGAGGAGGCAAGTCCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162261085|gb|FC436946.1|FC436946
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37849254|gb|BJ607262.1|BJ607262
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67720325|gb|BJ970584.1|BJ970584
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67701835|gb|BJ962068.1|BJ962068
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162209966|gb|FC385796.1|FC385796
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37831964|gb|BJ589976.1|BJ589976
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|18362344|gb|BJ194414.1|BJ194414
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67716746|gb|BJ967006.1|BJ967006
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67712576|gb|BJ966025.1|BJ966025
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67703085|gb|BJ963318.1|BJ963318
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|18367776|gb|BJ199859.1|BJ199859
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162270208|gb|FC446284.1|FC446284
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|18349465|gb|BJ181514.1|BJ181514
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67716643|gb|BJ966903.1|BJ966903
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67569245|gb|BJ942069.1|BJ942069
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162274827|gb|FC451062.1|FC451062
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162271310|gb|FC446181.1|FC446181
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67725267|gb|BJ975526.1|BJ975526
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67570999|gb|BJ943823.1|BJ943823
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67575355|gb|BJ948179.1|BJ948179
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162209967|gb|FC385797.1|FC385797
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162241306|gb|FC416937.1|FC416937
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|18364861|gb|BJ196934.1|BJ196934
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67578392|gb|BJ950559.1|BJ950559
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|18352269|gb|BJ184323.1|BJ184323
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|208383593|gb|DC903550.1|DC903550
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|18343862|gb|BJ175900.1|BJ175900
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67725655|gb|BJ975914.1|BJ975914
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67701284|gb|BJ961517.1|BJ961517
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37848314|gb|BJ606322.1|BJ606322
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67697255|gb|BJ957488.1|BJ957488
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37846534|gb|BJ604542.1|BJ604542
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67694304|gb|BJ954537.1|BJ954537
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67573584|gb|BJ946408.1|BJ946408
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162215279|gb|FC391047.1|FC391047
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67723967|gb|BJ974226.1|BJ974226
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|18342708|gb|BJ174743.1|BJ174743
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37827706|gb|BJ585718.1|BJ585718
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162274939|gb|FC450590.1|FC450590
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162247232|gb|FC423056.1|FC423056
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37850471|gb|BJ608479.1|BJ608479
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|18338963|gb|BJ170989.1|BJ170989
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162227897|gb|FC403705.1|FC403705
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67717133|gb|BJ967392.1|BJ967392
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67692501|gb|BJ952734.1|BJ952734
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67696970|gb|BJ957203.1|BJ957203
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37827711|gb|BJ585723.1|BJ585723
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|18369181|gb|BJ201266.1|BJ201266
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGANGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162221852|gb|FC398419.1|FC398419
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67696722|gb|BJ956955.1|BJ956955
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37834640|gb|BJ592652.1|BJ592652
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37848979|gb|BJ606987.1|BJ606987
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162261084|gb|FC436945.1|FC436945
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162204520|gb|FC380812.1|FC380812
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162220281|gb|FC396312.1|FC396312
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37836124|gb|BJ594132.1|BJ594132
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67726252|gb|BJ976511.1|BJ976511
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37842061|gb|BJ600069.1|BJ600069
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67573337|gb|BJ946161.1|BJ946161
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37821854|gb|BJ579920.1|BJ579920
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|18348414|gb|BJ180462.1|BJ180462
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162258722|gb|FC434521.1|FC434521
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|18353178|gb|BJ185233.1|BJ185233
EST:     NTTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37850481|gb|BJ608489.1|BJ608489
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162274826|gb|FC451061.1|FC451061
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37828417|gb|BJ586429.1|BJ586429
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67718904|gb|BJ969163.1|BJ969163
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162227898|gb|FC403706.1|FC403706
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67709889|gb|BJ965705.1|BJ965705
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|18349157|gb|BJ181206.1|BJ181206
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67727254|gb|BJ977513.1|BJ977513
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67573867|gb|BJ946691.1|BJ946691
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67717745|gb|BJ968004.1|BJ968004
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162220280|gb|FC396311.1|FC396311
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67724286|gb|BJ974545.1|BJ974545
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162246684|gb|FC425277.1|FC425277
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37851888|gb|BJ609896.1|BJ609896
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|162269282|gb|FC444786.1|FC444786
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37852783|gb|BJ610791.1|BJ610791
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|18348408|gb|BJ180456.1|BJ180456
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|67725163|gb|BJ975422.1|BJ975422
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|37823053|gb|BJ581119.1|BJ581119
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
EST: gi|18375201|gb|BJ206779.1|BJ206779
EST:     ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAG                         GCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG
genomic: ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 57

ATTATTGATGTTTTGCACCCTGGTCGTGCCAATGTCTCCAAGgtgagtggcc ... tttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAGACTATCTTCGTGTTCGGGTTCAGGACCCAGTTTGGAGGTGGCAAGTCCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgaagttagggttttgttggaggacggagctgaggttcgatggttttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAGACTATCTTCGTGTTCGGGTTCAGGACCCAGTTTGGAGGTGGCAAGTCCA
                                            ttttcactc  CT-rich tract
            ttttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtggcccactggaagctctatgtgttgtgtggtgtgtaatggcacatttttgggtttagtcgaagttagggttttgttggaggacggagctgaggttcgatggttttcactcagGCTGAGCTGAAGGAGAAGCTCGCGAAGCTGTACGAGGTGCGGGATCCCCAGACTATCTTCGTGTTCGGGTTCAGGACCCAGTTTGGAGGTGGCAAGTCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG