1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atttttcagcttatgcgaggcctttctcgaacgtttcaaagatgtaactacataacggtgttgcatgtgcaatagaggttaatacaatcgtctcttgcagGTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGCAAAAATCTCTGCTTTACGTAGCCAACTCTGTTGTTGAGCCTCAGAAGCC
species | Physcomitrella patens |
transcript | PP1S450_16V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG GTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGCEST: gi|67718057|gb|BJ968316.1|BJ968316
genomic: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAGgtaagaggtc ... tctcttgcagGTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGC
EST: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG ATGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGCEST: gi|67703527|gb|BJ963760.1|BJ963760
genomic: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAGgtaagaggtc ... tctcttgcagGTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGC
EST: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG GTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGCEST: gi|100413283|gb|BY956595.1|BY956595
genomic: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAGgtaagaggtc ... tctcttgcagGTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGC
EST: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG GTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGCEST: gi|100407659|gb|BY991791.1|BY991791
genomic: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAGgtaagaggtc ... tctcttgcagGTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGC
EST: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG GTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGCEST: gi|100383969|gb|BY987226.1|BY987226
genomic: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAGgtaagaggtc ... tctcttgcagGTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGC
EST: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG GTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGCEST: gi|18347028|gb|BJ179074.1|BJ179074
genomic: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAGgtaagaggtc ... tctcttgcagGTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGC
EST: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG GTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGCEST: gi|208398080|gb|DC904385.1|DC904385
genomic: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAGgtaagaggtc ... tctcttgcagGTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGC
EST: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG GTGACAGTANGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGCEST: gi|162207067|gb|FC382181.1|FC382181
genomic: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAGgtaagaggtc ... tctcttgcagGTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGC
EST: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAG GTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGC
genomic: GCCAATTCGCCTGCACGAGCTGGCTACTTCGGAGgtaagaggtc ... tctcttgcagGTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGC
aactacataacggtgttgcatgtgcaatagaggttaatacaatcgtctcttgcagGTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGCAAAAATCTCTGCTTTACGTAGCCAACTCTGTTGTTGAGCCTCAGAAGCC
tcgtctctt CT-rich tract
ttaatacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttttcagcttatgcgaggcctttctcgaacgtttcaaagatgtaactacataacggtgttgcatgtgcaatagaggttaatacaatcgtctcttgcagGTGACAGTAGGAGAGGGAGGAAAAGAAGAGGCACGGGGAACATGTCTGCGCAAAAATCTCTGCTTTACGTAGCCAACTCTGTTGTTGAGCCTCAGAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgca