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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgtcagccaaggcacaacgtatatgtgctcataatattttcagtgtcctcattgatttccatcatgaactcattatagtcctttgttggttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGCCCTCCACGCTCTGAGCGATTGCAATGTCTCATTCCGCCACCACCTGGCT

Basic information

species Physcomitrella patens
transcript PP1S43_170V6.4
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162164338|gb|FC341516.1|FC341516
EST:     ACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: ACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|18350697|gb|BJ182748.1|BJ182748
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|162171558|gb|FC347499.1|FC347499
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|18342914|gb|BJ174950.1|BJ174950
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|18355637|gb|BJ187696.1|BJ187696
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|162169959|gb|FC345899.1|FC345899
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|208364567|gb|DC935352.1|DC935352
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTANGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|18349385|gb|BJ181434.1|BJ181434
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|162156233|gb|FC332049.1|FC332049
EST:     CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC
EST: gi|18342843|gb|BJ174879.1|BJ174879
EST:     CAGGATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAG                         AGATGGTTTAAATACGACAAGCATCGTATGGCTTT-AGGGAGCGTCATTGC
genomic: CAGAATGTAATATCACATTACAAGATCACACTCCGTGTACCGACCCTAAGgtgaacatct ... gttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcctcattgatttccatcatgaactcattatagtcctttgttggttgcatcagAGATGGTTTAAATACGACAAGCATCGTATGGCTTTTAGGGAGCGTCATTGCCCTCCACGCTCTGAGCGATTGCAATGTCTCATTCCGCCACCACCTGGCT
      cattgat  putative branch site (score: 4)
       attgattt  TA-rich tract