1 5' 3' | 2 5' 3' | 3 5' 3' |
...agacacgtgagcgggaagactttattttatgacgacaacaaaattcaaacaaacatatgacgcatgagtttaatgggggtgagtggtgggaatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCAGGAGACGGCCGGAGATGTGCGTCTGACGGACACCCGGCAGGATGAGGC
species | Physcomitrella patens |
transcript | PP1S431_6V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|18327863|gb|BJ159867.1|BJ159867
genomic: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATGgtaagtggat ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|100419640|gb|BY957660.1|BY957660
genomic: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATGgtaagtggat ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|18356348|gb|BJ188407.1|BJ188407
genomic: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATGgtaagtggat ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|100446089|gb|CJ970388.1|CJ970388
genomic: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATGgtaagtggat ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATG GGAAGTCNACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|18327383|gb|BJ159385.1|BJ159385
genomic: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATGgtaagtggat ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|18357878|gb|BJ189937.1|BJ189937
genomic: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATGgtaagtggat ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|100450013|gb|CJ974050.1|CJ974050
genomic: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATGgtaagtggat ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAACATCAGAAATATGTCCGTTATTGCCCACGTCGATCACG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|18326615|gb|BJ158614.1|BJ158614
genomic: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATGgtaagtggat ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCEST: gi|18365797|gb|BJ197875.1|BJ197875
genomic: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATGgtaagtggat ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
EST: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATG GGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
genomic: CAAGAAGCACAACATCAGGAACATGTCCGTTATCGCCCATGTGGATCATGgtaagtggat ... aatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGC
caaacaaacatatgacgcatgagtttaatgggggtgagtggtgggaatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCAGGAGACGGCCGGAGATGTGCGTCTGACGGACACCCGGCAGGATGAGGC
gtttaat putative branch site (score: 4)
aaacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agacacgtgagcgggaagactttattttatgacgacaacaaaattcaaacaaacatatgacgcatgagtttaatgggggtgagtggtgggaatgtggcagGGAAGTCGACACTGACGGATTCGCTGGTGGCTGCTGCGGGGATTATCGCGCAGGAGACGGCCGGAGATGTGCGTCTGACGGACACCCGGCAGGATGAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG