1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaggaaacagcttttatttttttattgttagtttttttaaaggagattcaacatctatggaaccagttatttatttatttatttatttatttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCTTCGCGGACGGAGAAATCTACGTACAGCTACAAGAGAGTGTTCGTGGTT
species | Physcomitrella patens |
transcript | PP1S42_193V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|100383515|gb|BY950299.1|BY950299
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|100356373|gb|BY946332.1|BY946332
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATCTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|100360321|gb|BY966113.1|BY966113
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|100352263|gb|BY983120.1|BY983120
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|100399937|gb|BY990696.1|BY990696
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|162261958|gb|FC436817.1|FC436817
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|18331554|gb|BJ163565.1|BJ163565
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|100354646|gb|BY983494.1|BY983494
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|18326322|gb|BJ158321.1|BJ158321
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|100353033|gb|BY945573.1|BY945573
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|18325080|gb|BJ157076.1|BJ157076
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|100389903|gb|BY971255.1|BY971255
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|208380333|gb|DC907658.1|DC907658
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|18370446|gb|BJ202048.1|BJ202048
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|208357746|gb|DC902298.1|DC902298
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|100372888|gb|BY948750.1|BY948750
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: GGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|19780598|gb|BQ039579.1|BQ039579
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|18369243|gb|BJ201328.1|BJ201328
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|100441557|gb|BY980979.1|BY980979
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|208399184|gb|DC912427.1|DC912427
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|67573736|gb|BJ946560.1|BJ946560
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|67570680|gb|BJ943504.1|BJ943504
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|100429179|gb|BY977979.1|BY977979
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|67571017|gb|BJ943841.1|BJ943841
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|100353317|gb|BY964745.1|BY964745
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCEST: gi|162258694|gb|FC434389.1|FC434389
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
EST: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAA GAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
genomic: AGAATCGCCTCAAAATTTTCTCTGGCACTGCAAATAAGGCTCTTTCCCAAgtatatgcac ... tttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGC
gattcaacatctatggaaccagttatttatttatttatttatttatttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCTTCGCGGACGGAGAAATCTACGTACAGCTACAAGAGAGTGTTCGTGGTT
tttatttatttctt CT-rich tract
aaccagttatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaggaaacagcttttatttttttattgttagtttttttaaaggagattcaacatctatggaaccagttatttatttatttatttatttatttcttgtagGAAATCGCGTACTACATGGGTCTCGATTTAGGAAAGATAACCATAAAGCGCTTCGCGGACGGAGAAATCTACGTACAGCTACAAGAGAGTGTTCGTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA