1 5' 3' | 2 5' 3' | 3 5' 3' |
...gttgcacaatctgctagccgggatgtgtgtgtgccagcatactgcatgtgaagctggctgttgtttggtatgtgacaaagcgagcggttgaattgtgtagGTTATCGGCAATCAGCCAAAGACGTGGTAGGAGGAGCTCTCTTTATGGAACCTGGAGCAAGCGGTAGCAATGGTAGTGGAGGTGGTTGCGGAGGCATAGT
species | Physcomitrella patens |
transcript | PP1S42_130V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTCAAAACACCATTGCGTGTGGCGCAGGCATTCCAGGACGCTACTAGAG GTTATCGGCAATCAGCCAAAGACGTGGTAGGAGGAGCTCTCTTTATGGAACEST: gi|67704078|gb|BJ964311.1|BJ964311
genomic: TCTCAAAACACCATTGCGTGTGGCGCAGGCATTCCAGGACGCTACTAGAGgtgatctcag ... aattgtgtagGTTATCGGCAATCAGCCAAAGACGTGGTAGGAGGAGCTCTCTTTATGGAAC
EST: TCTCAAAACACCATTGCGTGTGGCGCAGGCATTCCAGGACGCTACTAGAG GTTATCGGCAATCAGCC
genomic: TCTCAAAACACCATTGCGTGTGGCGCAGGCATTCCAGGACGCTACTAGAGgtgatctcag ... aattgtgtagGTTATCGGCAATCAGCC
atgtgaagctggctgttgtttggtatgtgacaaagcgagcggttgaattgtgtagGTTATCGGCAATCAGCCAAAGACGTGGTAGGAGGAGCTCTCTTTATGGAACCTGGAGCAAGCGGTAGCAATGGTAGTGGAGGTGGTTGCGGAGGCATAGT
ttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgcacaatctgctagccgggatgtgtgtgtgccagcatactgcatgtgaagctggctgttgtttggtatgtgacaaagcgagcggttgaattgtgtagGTTATCGGCAATCAGCCAAAGACGTGGTAGGAGGAGCTCTCTTTATGGAACCTGGAGCAAGCGGTAGCAATGGTAGTGGAGGTGGTTGCGGAGGCATAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
-ttgcaca
- - - - - - - - - - - - - - - - - - - -tactgca