1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagaatcatttgcgtttgtgcattggaaagccttaccgatgttagtagacctaaaatttgtttaaacatgggcagttctttaccaccctatctacagctgttcaagtcatgtactgaacctctttgtatatggggtttagtttactgtgtggtttagttaggttctgaggtcctggtttttgtacctgagttgtcagGGTATGAGCCAGCTGGAACTCGAAGATGAAGTTCAGACAGATCTCAAGCGCGCAACAGGAGAAATTAGCAAAGACGGCGAAACCGATAGGAACCTGAACA
species | Physcomitrella patens |
transcript | PP1S42_100V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGCACAGCCAGACGACCTTATTGATTTCTATCATCTCAAAAGCAGAAAG GGTATGAGCCAGCTGGAACTCGAAGATGAAGTTCAGACAGATCTCAAGCGCEST: gi|162172247|gb|FC348812.1|FC348812
genomic: ATGCACAGCCAGACGACCTTATTGATTTCTATCATCTCAAAAGCAGAAAGgtaagaatca ... gagttgtcagGGTATGAGCCAGCTGGAACTCGAAGATGAAGTTCAGACAGATCTCAAGCGC
EST: ATGCACAGCCAGACGACCTTATTGATTTCTATCATCTCAAAAGCAGAAAG GGTATGAGCCAGCTGGAACTCGAAGATGAAGTTCAGACAGATCTCAAGCGC
genomic: ATGCACAGCCAGACGACCTTATTGATTTCTATCATCTCAAAAGCAGAAAGgtaagaatca ... gagttgtcagGGTATGAGCCAGCTGGAACTCGAAGATGAAGTTCAGACAGATCTCAAGCGC
tactgtgtggtttagttaggttctgaggtcctggtttttgtacctgagttgtcagGGTATGAGCCAGCTGGAACTCGAAGATGAAGTTCAGACAGATCTCAAGCGCGCAACAGGAGAAATTAGCAAAGACGGCGAAACCGATAGGAACCTGAACA
tttagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaatcatttgcgtttgtgcattggaaagccttaccgatgttagtagacctaaaatttgtttaaacatgggcagttctttaccaccctatctacagctgttcaagtcatgtactgaacctctttgtatatggggtttagtttactgtgtggtttagttaggttctgaggtcctggtttttgtacctgagttgtcagGGTATGAGCCAGCTGGAACTCGAAGATGAAGTTCAGACAGATCTCAAGCGCGCAACAGGAGAAATTAGCAAAGACGGCGAAACCGATAGGAACCTGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG