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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccttcaaacggaatggattctggtcacgtgtaggtctgtgtctttcagaatggttcttggtgtagcttgagcatcttgattgcgcatgtttcacgttgtaagataatccgctgagatgttgtgggggctggctctgagccgcgaagctgagacgtcctgctgtgtggtggaacctgttttgctgtcagTGTCTTCTGTCACCGCTTCTGATCATGCTTCTGGGTCTACCTCGGAGGAACATCAACCTCGCTCTACGTCTACTCCTGGCGCTGGCGGTGAAGGCGACAT

Basic information

species Physcomitrella patens
transcript PP1S426_2V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162169443|gb|FC345799.1|FC345799
EST:     ATCATCTGCGGAGGGTATAATGAAATTATTTCGTCAGAGCGTGGGAAAAG                         TGTCTTCTGTCACCGCTTCTGATCATGCTTCTGGGTCTACCTCGGAGGAAC
genomic: ATCATCTGCGGAGGGTATAATGAAATTATTTCGTCAGAGCGTGGGAAAAGgtaaccttca ... ttgctgtcagTGTCTTCTGTCACCGCTTCTGATCATGCTTCTGGGTCTACCTCGGAGGAAC
EST: gi|37837459|gb|BJ595467.1|BJ595467
EST:     GGTATAATGAAATTATTTCGTCAGAGCGTGGGAAAAG                         TGTCTTCTGTCACCGCTTCTGATCATGCTTCTGGGTCTACCTCGGAGGAAC
genomic: GGTATAATGAAATTATTTCGTCAGAGCGTGGGAAAAGgtaaccttca ... ttgctgtcagTGTCTTCTGTCACCGCTTCTGATCATGCTTCTGGGTCTACCTCGGAGGAAC
EST: gi|162200181|gb|FC376053.1|FC376053
EST:     ATCATCTGCGGAGGGTATAATGAAATTATTTCGTCAGAGCGTGGGAAAAG                         TGTCTTCTGTCACCGCTTCTGATCATGCTTCTGGGTCTACCTCGGAGGAAC
genomic: ATCATCTGCGGAGGGTATAATGAAATTATTTCGTCAGAGCGTGGGAAAAGgtaaccttca ... ttgctgtcagTGTCTTCTGTCACCGCTTCTGATCATGCTTCTGGGTCTACCTCGGAGGAAC
EST: gi|162236711|gb|FC413390.1|FC413390
EST:     ATCATCTGCGGAGGGTATAATGAAATTATTTCGTCAGAGCGTGGGAAAAG                         TGTCTTCTGTCACCGCTTCTGATCATGCTTCTGGGTCTACCTCGGAGGAAC
genomic: ATCATCTGCGGAGGGTATAATGAAATTATTTCGTCAGAGCGTGGGAAAAGgtaaccttca ... ttgctgtcagTGTCTTCTGTCACCGCTTCTGATCATGCTTCTGGGTCTACCTCGGAGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagccgcgaagctgagacgtcctgctgtgtggtggaacctgttttgctgtcagTGTCTTCTGTCACCGCTTCTGATCATGCTTCTGGGTCTACCTCGGAGGAACATCAACCTCGCTCTACGTCTACTCCTGGCGCTGGCGGTGAAGGCGACAT
                                       cctgtttt  CT-rich tract