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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgtatttggcattcacattattgtcttggcaacaagtcaatgaacccacgaattggaagagcatatcttctcatggacttgtgatttttttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAGGCCAGGCGTAAGAACGTAGGAGGCAAAGTCCTGGGTTTCTTCTATTGAG

Basic information

species Physcomitrella patens
transcript PP1S426_18V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S426_18V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G083497_T04 (Zea mays), 3'ss of exon 2
tctgtatttggcattcacattattgtcttggcaacaagtcaatgaacc-cacgaattggaagagcatatcttctcatggacttgtgatttttttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAGGCCAGGCGTAAGAACGTAGGAGGCAAAGTCCTGGGTTTCTTCTATTGAG
                   |||   | |||    | |    |||  |  ||  | || | |      |   | | |  |     ||   | ||    | |||| || || || ||  | || ||||| || || |||||||||||||| |||||| | || |||||||| |||||||||||||| |||||||| |||| | 
------------------gttagcctgttgttgtctatatcatgggctgcattattttgtatgttggactctttaagtggtaactgtgctcttatatgtagTTTGGCTATATCGTGCTTACAACCTCTGCGGGAATTATGGATCACGAGGAGGCCCGACGCAAGAACGTCGGAGGCAAAGTCCTTGGTTTCTTTTATTAAT

upper sequence: PP1S426_18V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G177720_T01 (Zea mays), 3'ss of exon 2
---------------tctgtatttggcattcacattattgtcttggca---acaagtcaatgaac-ccacgaattggaagagcatatct---tctcatggacttgtgattt--ttttggg-gcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAGGCCAGGCGTAAGAACGTAGGAGGCAAAGTCCTGGGTTTCTTCTATTGAG
                ||  |        |  |||| || ||||  |    ||||     |   | |   |  |||   ||  ||   |   ||| || |   | |  |||  | |||   ||||||||| ||||| ||  | || || || || || || ||||| ||||| |||||| | || |||| |||||||||||| || || ||||||||||||||| 
gttagtccgcagactactacaac-actggttgcattgttttcttcccgcacacaaactgcttggcgctttgttttgcttgattatgcttggttctaattgtgctttcttttactcttgtatgcagTTCGGATACATCGTCCTCACAACTTCGGCAGGCATCATGGACCACGAGGAGGCCCGCCGGAAGAGCGTAGGAGGCAAGGTTCTAGGTTTCTTCTATTGAA

upper sequence: PP1S426_18V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA01G45060.1 (Glycine max), 3'ss of exon 3
----tctgtatttggcattcacattattgtcttggcaacaagtcaatgaacccacgaattggaagagcatatcttctcatggacttgtgatttttttggg---gcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAGGCCAGGCGTAAGAACGTAGGAGGCAAAGTCCTGGGTTTCTTCTATTGAG
     || | | ||   |  || ||||  | |  |  |        ||  |  | |  ||       | | | | | | |  |||| |||||  |        |||||| ||||| ||||| ||||| ||||| |||||||| |||||||| || ||||| ||| | ||||| || || || |||||  ||||||||||||| |  |
ctaacctatctgtgat-taaactttatgttgtccgttattctcttgtgcgcatatggtttct-----cctgtttgcccctaaactt-tgattgctcaaaatgcgcagTTTGGTTATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAGG

upper sequence: PP1S426_18V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA11G00590.1 (Glycine max), 3'ss of exon 2
-tctgtatttggcattcacattattgtcttggcaacaagtcaatgaacccacgaattggaagagcatatcttctcatggacttgtgatttttt----tggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAGGCCAGGCGTAAGAACGTAGGAGGCAAAGTCCTGGGTTTCTTCTATTGAG
     ||| ||  ||| |  ||  |||  |  |   |      || |  ||     |||     | | | | | | |  |||| || ||  |     ||  |||||| || || ||||| ||||| ||||| |||||||| |||||||| || ||||| ||| | ||||| || || || |||||  ||||||||||||| |  |
taacctatctgtgattaaactttatgttgtc-cgttattctcttgtatgcata---tggtttctcctgtttgcccctaaactt-tggttgctcaaaatgatgcagTTTGGGTATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAGG

upper sequence: PP1S426_18V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA11G00600.2 (Glycine max), 3'ss of exon 3
--tctgtatttggcattcacattattgtcttggcaacaagtcaatgaacccacgaattggaagagcatatcttctcatggacttgtgatttttt----tggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAGGCCAGGCGTAAGAACGTAGGAGGCAAAGTCCTGGGTTTCTTCTATTGAG
      ||| ||  ||| |  ||  | | ||| |   |      || |  ||     |||     | | | | | | |  |||| || ||  |     ||  |||||| || || ||||| ||||| ||||| |||||||| |||||||| || ||||| ||| | ||||| || || || |||||  ||||||||||||| |  |
ctaacctatctgtgattaaactt--tatgttgccgttattctcttgtatgcata---tggtttctcctgtttgcccctaaactt-tggttgctcaaaatgatgcagTTTGGGTATATTGTCTTGACAACCTCTGCTGGTATCATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAAGTGTTGGGTTTCTTCTACTAGG

upper sequence: PP1S426_18V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT5G59850.1 (Arabidopsis thaliana), 3'ss of exon 3
-tctgtatttggcattcacattattgtcttggcaacaagtcaatgaacccacgaattggaagagcatatcttctcatggacttgtgatttttttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAGGCCAGGCGTAAGAACGTAGGAGGCAAAGTCCTGGGTTTCTTCTATTGAG
 ||||| |||   | ||   ||  | | ||||   |  ||   | ||    | |  |   |     |    |  ||| || || | |  || |    |||||| || ||||||||  | |||||||| |||||||||||||| ||||| || |||||| | ||||| || || ||||| || || || ||||| || ||| 
gtctgtctttta-agtcttgttcatattttggtt-ctggttttttaaagagcaatcttatattcagtgatcttacattgagttcttaaattgt----gcagTTTGGGTACATTGTTCTTACGACCTCGGCTGGTATTATGGACCACGAAGAAGCCAGGAGAAAGAATGTTGGTGGCAAGGTTCTTGGCTTCTTTTACTGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162231710|gb|FC408277.1|FC408277
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|7067048|gb|AW496903.1|AW496903
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162239142|gb|FC416255.1|FC416255
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67712889|gb|BJ966338.1|BJ966338
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67699723|gb|BJ959956.1|BJ959956
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162261276|gb|FC437293.1|FC437293
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67726177|gb|BJ976436.1|BJ976436
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|7047188|gb|AW477082.1|AW477082
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162213781|gb|FC390396.1|FC390396
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67718415|gb|BJ968674.1|BJ968674
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162262501|gb|FC439518.1|FC439518
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162263426|gb|FC439364.1|FC439364
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|37843064|gb|BJ601072.1|BJ601072
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67725285|gb|BJ975544.1|BJ975544
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67726882|gb|BJ977141.1|BJ977141
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|37835086|gb|BJ593098.1|BJ593098
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67576223|gb|BJ949047.1|BJ949047
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67571908|gb|BJ944732.1|BJ944732
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67720044|gb|BJ970303.1|BJ970303
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162218927|gb|FC395159.1|FC395159
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162239896|gb|FC415735.1|FC415735
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67717665|gb|BJ967924.1|BJ967924
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162161057|gb|FC337042.1|FC337042
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162209262|gb|FC385182.1|FC385182
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|18349517|gb|BJ181567.1|BJ181567
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|18344628|gb|BJ176669.1|BJ176669
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|37829936|gb|BJ587948.1|BJ587948
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162275473|gb|FC451852.1|FC451852
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162200403|gb|FC376675.1|FC376675
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162202139|gb|FC378047.1|FC378047
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67726648|gb|BJ976907.1|BJ976907
EST:     GAGTTGGTGAACTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67703581|gb|BJ963814.1|BJ963814
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67704486|gb|BJ964719.1|BJ964719
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|18372100|gb|BJ203702.1|BJ203702
EST:     AGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGA
genomic: AGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCT-CGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGA
EST: gi|162200404|gb|FC376676.1|FC376676
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|7583741|gb|AW699647.1|AW699647
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162249088|gb|FC421509.1|FC421509
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67723720|gb|BJ973979.1|BJ973979
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67720578|gb|BJ970837.1|BJ970837
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|18335587|gb|BJ167607.1|BJ167607
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|19784577|gb|BQ040205.1|BQ040205
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67720248|gb|BJ970507.1|BJ970507
EST:     GAGTTGGTGAGCTCGGAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67724596|gb|BJ974855.1|BJ974855
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162200842|gb|FC377037.1|FC377037
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162263427|gb|FC439365.1|FC439365
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162161056|gb|FC337041.1|FC337041
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67722090|gb|BJ972349.1|BJ972349
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162275472|gb|FC451851.1|FC451851
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162270718|gb|FC446331.1|FC446331
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|37839577|gb|BJ597585.1|BJ597585
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|37828472|gb|BJ586484.1|BJ586484
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67695274|gb|BJ955507.1|BJ955507
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67702085|gb|BJ962318.1|BJ962318
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67718160|gb|BJ968419.1|BJ968419
EST:     GAGTTGGTGAACTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162270414|gb|FC447114.1|FC447114
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162227229|gb|FC402846.1|FC402846
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|100387308|gb|BY970452.1|BY970452
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|37823827|gb|BJ581893.1|BJ581893
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162251881|gb|FC426989.1|FC426989
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|18350610|gb|BJ182661.1|BJ182661
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|67716764|gb|BJ967024.1|BJ967024
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|162239897|gb|FC415736.1|FC415736
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
EST: gi|18327313|gb|BJ159315.1|BJ159315
EST:     GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAG                         TTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG
genomic: GAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 51

CAATGGAAGATTGAACAAGTGCGGTGTCATCAGTCCTCGTTACAACGTTGGAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgttt ... tttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAGGCCAGGCGTAAGAACGTAGGAGGCAAAGTCCTGGGTTTCTTCTATTGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acccacgaattggaagagcatatcttctcatggacttgtgatttttttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAGGCCAGGCGTAAGAACGTAGGAGGCAAAGTCCTGGGTTTCTTCTATTGAG
                                         ttttttt  CT-rich tract
                                      tgattttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctgtatttggcattcacattattgtcttggcaacaagtcaatgaacccacgaattggaagagcatatcttctcatggacttgtgatttttttggggcagTTCGGTTACATTGTATTGACGACCTCAGCTGGTATTATGGATCACGATGAGGCCAGGCGTAAGAACGTAGGAGGCAAAGTCCTGGGTTTCTTCTATTGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG