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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattagcttctttgagatttatgctcaagttcatgttttgacagctcggttgaatttaagtatttaagaatcccattctgtgttttggttacacttgcagCAAAGGACACGAAGGGAGTTGGAAAAGGCTAATACTGTGGTATCGAGGCATCCTGAATATCGATACTCAACTGAGTTTCAAAGTCATGAGCCGGAG

Basic information

species Physcomitrella patens
transcript PP1S425_2V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162150295|gb|FC326380.1|FC326380
EST:     GCGACAGAGGAGGACGTGTTGTGCTTTTTGAGAGAACCGATGGCAGAGAC                         CAAAGGACACGAAGGGAGTTGGAAAAGGCTAATACTGTGGTATCGAGGCAT
genomic: GCGACAGAGGAGGACGTGTTGTGCTTTTTGAGAGAACCGATGGCAGAGACgtacgtcctc ... acacttgcagCAAAGGACACGAAGGGAGTTGGAAAAGGCTAATACTGTGGTATCGAGGCAT
EST: gi|100389123|gb|BY952327.1|BY952327
EST:     GCGACAGAGGAGGACGTGTTGTGCTTTTTGAGAGAACCGATGGCAGAGAC                         CAAAGGACACGAAGGGAGTTGGAAAAGGCTAATACTGTGGTATCGAGGCAT
genomic: GCGACAGAGGAGGACGTGTTGTGCTTTTTGAGAGAACCGATGGCAGAGACgtacgtcctc ... acacttgcagCAAAGGACACGAAGGGAGTTGGAAAAGGCTAATACTGTGGTATCGAGGCAT
EST: gi|162255330|gb|FC432056.1|FC432056
EST:     GCGACAGAGGAGGACGTGTTGTGCTTTTTGAGAGAACCGATGGCAGAGAC                         CAAAGGACACGAAGGGAGTTGGAAAAGGCTAATACTGTGGTATCGAGGCAT
genomic: GCGACAGAGGAGGACGTGTTGTGCTTTTTGAGAGAACCGATGGCAGAGACgtacgtcctc ... acacttgcagCAAAGGACACGAAGGGAGTTGGAAAAGGCTAATACTGTGGTATCGAGGCAT
EST: gi|100386449|gb|BY951245.1|BY951245
EST:     GCGACAGAGGAGGACGTGTTGTGCTTTTTGAGAGAACCGATGGCAGAGAC                         CAAAGGACACGAAGGGAGTTGGAAAAGGCTAATACTGTGGTATCGAGGCAT
genomic: GCGACAGAGGAGGACGTGTTGTGCTTTTTGAGAGAACCGATGGCAGAGACgtacgtcctc ... acacttgcagCAAAGGACACGAAGGGAGTTGGAAAAGGCTAATACTGTGGTATCGAGGCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcggttgaatttaagtatttaagaatcccattctgtgttttggttacacttgcagCAAAGGACACGAAGGGAGTTGGAAAAGGCTAATACTGTGGTATCGAGGCATCCTGAATATCGATACTCAACTGAGTTTCAAAGTCATGAGCCGGAG
     tgaatttaagtattta  TA-rich tract