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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggacccacctccgccgtggagagcctgaaggccgagagaagaagcaatgtggttgaagaagccggataccagcctcttcgggtgtatgccgcgaggggaagtaaaaagattgaggggcgaaagttgcgagtggcagttgtcggagGTGGCCCTGCCGGTGGATGCGCTGCGGAGACTCTTGCCAAGGGCGGAATTGAGACATTTCTCATTGAGCGAAAGTTGGATAATGCTAAGCCATGTGGGGG

Basic information

species Physcomitrella patens
transcript PP1S425_20V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100386963|gb|BY988232.1|BY988232
EST:     GCGTAATGCTTCGTTGAAGTCCTTCGAGGGCTTGAGGGGTTTGAATGCCA                         GTGGCCCTGCCGGTGGATGCGCTGCGGAGACTCTTGCCAAGGGCGGAATTG
genomic: GCGTAATGCTTCGTTGAAGTCCTTCGAGGGCTTGAGGGGTTTGAATGCCAgtggacccac ... gttgtcggagGTGGCCCTGCCGGTGGATGCGCTGCGGAGACTCTTGCCAAGGGCGGAATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgaggggaagtaaaaagattgaggggcgaaagttgcgagtggcagttgtcggagGTGGCCCTGCCGGTGGATGCGCTGCGGAGACTCTTGCCAAGGGCGGAATTGAGACATTTCTCATTGAGCGAAAGTTGGATAATGCTAAGCCATGTGGGGG
           taaaaagatt  TA-rich tract