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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcgagtgatttcgatgtgtatcatccatcgtcgaatattcaatcctcattgtgattgaatgagtgtgtatggaaatcttgtattcgtatatcacctttgtttgattcgactgtgccttgacttattgcgtgagtggctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG

Basic information

species Physcomitrella patens
transcript PP1S41_304V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37842439|gb|BJ600447.1|BJ600447
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|6167659|gb|AW145923.1|AW145923
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|162206214|gb|FC382284.1|FC382284
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|208398384|gb|DC916467.1|DC916467
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|67719834|gb|BJ970093.1|BJ970093
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|37844913|gb|BJ602921.1|BJ602921
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|67692429|gb|BJ952662.1|BJ952662
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|67569183|gb|BJ942007.1|BJ942007
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|19782800|gb|BQ039918.1|BQ039918
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|67695840|gb|BJ956073.1|BJ956073
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|19790836|gb|BQ042081.1|BQ042081
EST:     CATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: CATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|37822492|gb|BJ580558.1|BJ580558
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|18328502|gb|BJ160507.1|BJ160507
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|37839676|gb|BJ597684.1|BJ597684
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|18362382|gb|BJ194452.1|BJ194452
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|162244690|gb|FC424618.1|FC424618
EST:     GGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: GGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|18374348|gb|BJ205926.1|BJ205926
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|162245640|gb|FC423323.1|FC423323
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|18343896|gb|BJ175934.1|BJ175934
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|162236574|gb|FC413149.1|FC413149
EST:     GGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: GGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|18336730|gb|BJ168753.1|BJ168753
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|162244689|gb|FC424617.1|FC424617
EST:     GGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: GGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|162206556|gb|FC382925.1|FC382925
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|67572959|gb|BJ945783.1|BJ945783
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|162279100|gb|FC455439.1|FC455439
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|19790377|gb|BQ041841.1|BQ041841
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|67694866|gb|BJ955099.1|BJ955099
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|67578315|gb|BJ950482.1|BJ950482
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|162238058|gb|FC414248.1|FC414248
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|67572468|gb|BJ945292.1|BJ945292
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|18356295|gb|BJ188354.1|BJ188354
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|37828652|gb|BJ586664.1|BJ586664
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|67728094|gb|BJ978353.1|BJ978353
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|162232853|gb|FC407506.1|FC407506
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|18343290|gb|BJ175328.1|BJ175328
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|37833227|gb|BJ591239.1|BJ591239
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|18365237|gb|BJ197311.1|BJ197311
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|19782143|gb|BQ039816.1|BQ039816
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|67696341|gb|BJ956574.1|BJ956574
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|162203716|gb|FC378591.1|FC378591
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|37823089|gb|BJ581155.1|BJ581155
EST:     TGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|67701193|gb|BJ961426.1|BJ961426
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|162238059|gb|FC414249.1|FC414249
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|162236575|gb|FC413150.1|FC413150
EST:     GGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: GGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|19780736|gb|BQ039607.1|BQ039607
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|19789619|gb|BQ041413.1|BQ041413
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|67571525|gb|BJ944349.1|BJ944349
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
EST: gi|162203717|gb|FC378592.1|FC378592
EST:     TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAG                         GTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
genomic: TGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 31

AAAGAAGCAGCAGAATTTAATGCGGGAGATTAAGGTTCAGAAACTTGTTCTGAACATCTCTGTCGGAGAGAGCGGAGATCGTCTCACACGTGCTTCCAAGgcgagtgatt ... ctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacctttgtttgattcgactgtgccttgacttattgcgtgagtggctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG
                       ccttgac  putative branch site (score: 31)
        tttgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcgagtgatttcgatgtgtatcatccatcgtcgaatattcaatcctcattgtgattgaatgagtgtgtatggaaatcttgtattcgtatatcacctttgtttgattcgactgtgccttgacttattgcgtgagtggctttggtcagGTGTTGGAGCAACTCAGTGGTCAATCCCCTGTCTTCTCCAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA