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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttttcagtggcttcgttcggtattaacacttctgtttataatatgactttgtttctcctaattttgtgacgttgtcttatgtgtgtaattctccgcagATTATGTTGGCTGTTCTGATAGCGTTGTTGACTATTTTGACGTGGCACTTCACCACGGTATATACCACGAGGTCAATTAAGAATTTGGCTTTTGGTCTAC

Basic information

species Physcomitrella patens
transcript PP1S41_302V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18347264|gb|BJ179310.1|BJ179310
EST:     ACCGCCGGACATATTACTACAGCATGTTTTCTGTTCGCCTGGCGATCATG                         ATTATGTTGGCTGTTCTGATAGCGTTGTTGACTATTTTGACGTGGCACTTC
genomic: ACCGCCGGACATATTACTACAGCATGTTTTCTGTTCGCCTGGCGATCATGgtgattgtca ... ttctccgcagATTATGTTGGCTGTTCTGATAGCGTTGTTGACTATTTTGACGTGGCACTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgactttgtttctcctaattttgtgacgttgtcttatgtgtgtaattctccgcagATTATGTTGGCTGTTCTGATAGCGTTGTTGACTATTTTGACGTGGCACTTCACCACGGTATATACCACGAGGTCAATTAAGAATTTGGCTTTTGGTCTAC
            tcctaat  putative branch site (score: 2)
                                             ttctccgc  putative PPT
               taattttgt  TA-rich tract