1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtgttgtctcagatagatataatcccgatgttttttttttttttttttttttatatttattttgacctcttttcgttttttcttaaatcagctccctaaggtacttcaagctgttttaatgactttgcatgatttctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG
species | Physcomitrella patens |
transcript | PP1S41_288V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|100362100|gb|BY966332.1|BY966332
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCTAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|208389785|gb|DC938333.1|DC938333
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|67574213|gb|BJ947037.1|BJ947037
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|18367079|gb|BJ199159.1|BJ199159
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|162261873|gb|FC438397.1|FC438397
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: CTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|162208338|gb|FC384650.1|FC384650
genomic: CTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|67569697|gb|BJ942521.1|BJ942521
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|18356720|gb|BJ188779.1|BJ188779
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|18358000|gb|BJ190059.1|BJ190059
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|18367904|gb|BJ199987.1|BJ199987
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|18373417|gb|BJ204995.1|BJ204995
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|67507947|gb|BJ940822.1|BJ940822
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|67570034|gb|BJ942858.1|BJ942858
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|18331944|gb|BJ163956.1|BJ163956
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|100393083|gb|BY989735.1|BY989735
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|100383314|gb|BY987055.1|BY987055
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|208368231|gb|DC931457.1|DC931457
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|22132263|gb|BQ827064.1|BQ827064
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|100443023|gb|BY981649.1|BY981649
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|18368770|gb|BJ200855.1|BJ200855
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAGGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|18343655|gb|BJ175693.1|BJ175693
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: CGATATTATCAAGCAAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|18345702|gb|BJ177745.1|BJ177745
genomic: CGATATTATCAAGC-AGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|100388445|gb|BY952047.1|BY952047
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|18343615|gb|BJ175653.1|BJ175653
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|18364030|gb|BJ196103.1|BJ196103
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|100447071|gb|CJ971370.1|CJ971370
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|100442970|gb|BY963465.1|BY963465
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|208389289|gb|DC933317.1|DC933317
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|208391882|gb|DC945961.1|DC945961
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: AGAAGGCTAACGCCAAAACTCGNATTCCG ATCAAAGGGAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|100447799|gb|CJ972098.1|CJ972098
genomic: AGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|100392179|gb|BY953233.1|BY953233
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|18348521|gb|BJ180570.1|BJ180570
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|100416674|gb|BY993031.1|BY993031
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|100402967|gb|BY973441.1|BY973441
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|162261874|gb|FC438398.1|FC438398
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|18345749|gb|BJ177792.1|BJ177792
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTEST: gi|100383489|gb|BY950273.1|BY950273
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
EST: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCG ATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
genomic: ACGATATTATCAAGCAGTCGAAGAAGGCTAACGCCAAAACTCGAATTCCGgtaagtgttg ... tctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTT
agctccctaaggtacttcaagctgttttaatgactttgcatgatttctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG
ttttaat putative branch site (score: 33)
tttctcttgc putative PPT
tgttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgttgtctcagatagatataatcccgatgttttttttttttttttttttttatatttattttgacctcttttcgttttttcttaaatcagctccctaaggtacttcaagctgttttaatgactttgcatgatttctcttgcagATCAAAGGAAGAAATAAGACGCCAAACGCTCTTGCTGCTAAGGCTGCACTTCAAAAATCTGTTGCTGCTCGATCATCAGGCATGCGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT