Sequence
atgc intronic sequence ATGC exonic sequence...tgaccatatgtacacgatttctagtgctgaaaattgcttaacttgttcgatgccaataccgtaatacattgtaactgagacaactaatgttactctgcagGTCGTATTTATGACGTAACAGAGGCTCCAGTGATGCTGTCACCGTTGTGCACCGATGCAGCAAAGGTCATGTTCTGCTTGAAAGTTAAATAGGAGGTCGT
Basic information
species | Physcomitrella patens |
transcript | PP1S41_205V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18357618|gb|BJ189677.1|BJ189677EST: CTTCACGGCTGATAAACACTTTCTCCATCGCTCAAGAAACGCTGTAGTTT GTCGTATTTATGACGTAACAGAGGCTCCAGTGATGCTGTCACCGTTGTGCA
genomic: CTTCACGGCTGATAAACACTTTCTCCATCGCTCAAGAAACGCTGTAGTTTgtattttatt ... tactctgcagGTCGTATTTATGACGTAACAGAGGCTCCAGTGATGCTGTCACCGTTGTGCA
EST:
gi|18357039|gb|BJ189098.1|BJ189098EST: CTTCACGGCTGATAAACACTTTCTCCATCGCTCAAGAAACGCTGTAGTTT GTCGTATTTATGACGTAACAGAGGCTCCAGTGATGCTGTCACCGTTGTGCA
genomic: CTTCACGGCTGATAAACACTTTCTCCATCGCTCAAGAAACGCTGTAGTTTgtattttatt ... tactctgcagGTCGTATTTATGACGTAACAGAGGCTCCAGTGATGCTGTCACCGTTGTGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcgatgccaataccgtaatacattgtaactgagacaactaatgttactctgcagGTCGTATTTATGACGTAACAGAGGCTCCAGTGATGCTGTCACCGTTGTGCACCGATGCAGCAAAGGTCATGTTCTGCTTGAAAGTTAAATAGGAGGTCGT
aactaat putative branch site (score: 2)
ttactct CT-rich tract
taatacatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgaccatatgtacacgatttctagtgctgaaaattgcttaacttgttcgatgccaataccgtaatacattgtaactgagacaactaatgttactctgcagGTCGTATTTATGACGTAACAGAGGCTCCAGTGATGCTGTCACCGTTGTGCACCGATGCAGCAAAGGTCATGTTCTGCTTGAAAGTTAAATAGGAGGTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - tgctgaa