1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatgagcttacctacacatctcgcttcttttctacgcaatcgtactgcatgttcataactatgcctgactaccttgaaattttacttgatttttttaaagttcctataggctctctcttaattcaagttcaatcttttgtctatgtttgaagACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTG
species | Physcomitrella patens |
transcript | PP1S41_177V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAG ACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGAEST: gi|18345999|gb|BJ178042.1|BJ178042
genomic: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAGgtatgagctt ... atgtttgaagACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGA
EST: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAG ACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGAEST: gi|162230102|gb|FC406250.1|FC406250
genomic: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAGgtatgagctt ... atgtttgaagACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGA
EST: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAG ACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGAEST: gi|18344702|gb|BJ176743.1|BJ176743
genomic: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAGgtatgagctt ... atgtttgaagACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGA
EST: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAG ACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGAEST: gi|208350063|gb|DC910298.1|DC910298
genomic: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAGgtatgagctt ... atgtttgaagACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGA
EST: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAG ACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGAEST: gi|162263739|gb|FC439638.1|FC439638
genomic: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAGgtatgagctt ... atgtttgaagACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGA
EST: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAG ACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGAEST: gi|100353603|gb|BY964889.1|BY964889
genomic: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAGgtatgagctt ... atgtttgaagACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGA
EST: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAG ACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGAEST: gi|208354187|gb|DC902443.1|DC902443
genomic: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAGgtatgagctt ... atgtttgaagACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGA
EST: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAG ACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGAEST: gi|100389012|gb|BY952216.1|BY952216
genomic: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAGgtatgagctt ... atgtttgaagACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGA
EST: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAG ACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGAEST: gi|67569370|gb|BJ942194.1|BJ942194
genomic: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAGgtatgagctt ... atgtttgaagACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGA
EST: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAG ACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGA
genomic: CATCCTTCCTTTACGCATCGAAGCAGCTCAACTCTGTTGTCAGATCATAGgtatgagctt ... atgtttgaagACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGA
aagttcctataggctctctcttaattcaagttcaatcttttgtctatgtttgaagACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTG
tcttaat putative branch site (score: 3)
ttaattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagcttacctacacatctcgcttcttttctacgcaatcgtactgcatgttcataactatgcctgactaccttgaaattttacttgatttttttaaagttcctataggctctctcttaattcaagttcaatcttttgtctatgtttgaagACCTCAATCGTCTCTTTCATTTGCAAGTTGCGATGCTGATAAACTATCCGAAGCGCATCAGTACCAGATGCATAACCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG