1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgtgttactattaccacgattgtggctggatgtactactttctgcatcggtctctttaggcatctttttactcttaacttttagaaattcaccatcttgtctcagttttagttatagacaacctgacttacctgtgaacaatggatgcagTTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTTCGTACACACCCAAGAGCCGAGAGCGACCCGTGGCGATCAAGAGCAGTTA
species | Physcomitrella patens |
transcript | PP1S41_16V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGTTAGTGTGTTATTTTGGGTTGTCAGCCTTGTCCAGGAAAGCACTTGG TTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTTEST: gi|208360227|gb|DC950214.1|DC950214
genomic: ACGTTAGTGTGTTATTTTGGGTTGTCAGCCTTGTCCAGGAAAGCACTTGGgtacgtgtta ... atggatgcagTTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTT
EST: TGTCAGCC-TGTCCAGG-AAGCACTT-G NTGANTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTTEST: gi|162267251|gb|FC442663.1|FC442663
genomic: TGTCAGCCTTGTCCAGGAAAGCACTTGGgtacgtgtta ... atggatgcagTTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTT
EST: TCAGCCTTGTCCAGGAAAGCACTTGG TTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTTEST: gi|162267252|gb|FC442664.1|FC442664
genomic: TCAGCCTTGTCCAGGAAAGCACTTGGgtacgtgtta ... atggatgcagTTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTT
EST: ACGTTAGTGTGTTATTTTGGGTTGTCAGCCTTGTCCAGGAAAGCACTTGG TTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTT
genomic: ACGTTAGTGTGTTATTTTGGGTTGTCAGCCTTGTCCAGGAAAGCACTTGGgtacgtgtta ... atggatgcagTTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTT
cttgtctcagttttagttatagacaacctgacttacctgtgaacaatggatgcagTTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTTCGTACACACCCAAGAGCCGAGAGCGACCCGTGGCGATCAAGAGCAGTTA
gacttac putative branch site (score: 2)
ttttagttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgttactattaccacgattgtggctggatgtactactttctgcatcggtctctttaggcatctttttactcttaacttttagaaattcaccatcttgtctcagttttagttatagacaacctgacttacctgtgaacaatggatgcagTTGATTGACCCATATTGGACTATTATACCGGTTATGATAGGCTACTTTTTTCGTACACACCCAAGAGCCGAGAGCGACCCGTGGCGATCAAGAGCAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG