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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtatacctctcacctattcctcatgtacatctgacaaaaattaacaacaaatgaacagataagtacgtaatgcaaaacattcttgcacttctaacctgagtgaggcatttgtcgattgcagcaacaagaatgtttggaagaatagtttgactttttacttacatgtgaacaatgttcaaacagGTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGTGTAGCTAGAGCGCCTTCCTGGACAGTAACGGTTTTGACGTTTGTAGTCG

Basic information

species Physcomitrella patens
transcript PP1S41_163V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100355722|gb|BY965113.1|BY965113
EST:     TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCT                         GTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
genomic: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCTgttagtatac ... gttcaaacagGTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
EST: gi|100443634|gb|BY963731.1|BY963731
EST:     TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCT                         GTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
genomic: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCTgttagtatac ... gttcaaacagGTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
EST: gi|18372803|gb|BJ204405.1|BJ204405
EST:     TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCT                         GTGAAACCTTGTTCG
genomic: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCTgttagtatac ... gttcaaacagGTGAAACCTTGTTCG
EST: gi|100420676|gb|BY993459.1|BY993459
EST:     TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCT                         GTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
genomic: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCTgttagtatac ... gttcaaacagGTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
EST: gi|162180390|gb|FC355811.1|FC355811
EST:     TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCT                         GTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
genomic: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCTgttagtatac ... gttcaaacagGTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
EST: gi|162196614|gb|FC374904.1|FC374904
EST:     TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCT                         GTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
genomic: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCTgttagtatac ... gttcaaacagGTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
EST: gi|208397811|gb|DC912020.1|DC912020
EST:     TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCT                         GTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT
genomic: TGCAGAGGCTCAGAAGAAGCGCTCAATTTAAGGAAATTTCAAATGACTCTgttagtatac ... gttcaaacagGTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgtttggaagaatagtttgactttttacttacatgtgaacaatgttcaaacagGTGAAACCTTGTTCGGAAGGGCCAATTGAAGATCTCAGAGTGTACGACAGTGTAGCTAGAGCGCCTTCCTGGACAGTAACGGTTTTGACGTTTGTAGTCG
                           tacttac  putative branch site (score: 1)
                       tttttactta  TA-rich tract