1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaattgatgaacttgaaatttgcacttttatgtacccaatggaaactgtaatccaaagttgctgtaatttcttgccctctctcgttctttcgtagtgaagtgtttttgtttccgagttatccagtttttggcgtgatagGCTGTATTAACCAGAGTCAACACTTTCACTGGAGTGGCCTACCGCGATGATCCAACAATCTTTGGTTGGGAGCTCATGAATGAGCCCCATTGTAAATCCG
species | Physcomitrella patens |
transcript | PP1S41_160V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTTCTTCCGAAACGCCAAATGCCGGCAGTATTATAGAAACCATGTGAAG GCTGTATTAACCAGAGTCAACACTTTCACTGGAGTGGCCTACCGCGATGATEST: gi|208384162|gb|DC911284.1|DC911284
genomic: ACTTCTTCCGAAACGCCAAATGCCGGCAGTATTATAGAAACCATGTGAAGgtaattgatg ... ggcgtgatagGCTGTATTAACCAGAGTCAACACTTTCACTGGAGTGGCCTACCGCGATGAT
EST: ACTTCTTCCGAAACGCCAAATGCCGGCAGTATTATAGAAACCATGTGAAG GCTGTATTAACCAGAGTCAACACTTTCACTGGAGTGGCCTACCGCGATGAT
genomic: ACTTCTTCCGAAACGCCAAATGCCGGCAGTATTATAGAAACCATGTGAAGgtaattgatg ... ggcgtgatagGCTGTATTAACCAGAGTCAACACTTTCACTGGAGTGGCCTACCGCGATGAT
ttctttcgtagtgaagtgtttttgtttccgagttatccagtttttggcgtgatagGCTGTATTAACCAGAGTCAACACTTTCACTGGAGTGGCCTACCGCGATGATCCAACAATCTTTGGTTGGGAGCTCATGAATGAGCCCCATTGTAAATCCG
tttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgatgaacttgaaatttgcacttttatgtacccaatggaaactgtaatccaaagttgctgtaatttcttgccctctctcgttctttcgtagtgaagtgtttttgtttccgagttatccagtttttggcgtgatagGCTGTATTAACCAGAGTCAACACTTTCACTGGAGTGGCCTACCGCGATGATCCAACAATCTTTGGTTGGGAGCTCATGAATGAGCCCCATTGTAAATCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA