1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agaaggtatactgaattaacatcggtagaagtggattgattttgtaactcgacatcggaaaaccctagttcttaaaaggttgggagaagaaatgtgacagGTGCGCAGCAGGCAAGGGATTTGGGTGCGTGGTTAAGAGAGCACTACGTACCCCAGTTCAGCAACCCTGTGGGAAAGGTCAGGCTTCAGGAGGCGCCTGA
species | Physcomitrella patens |
transcript | PP1S41_144V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAAAATTCTTTCGACAGAAGTATCCGTGGGGAAATCTCACTACCAAGG GTGCGCAGCAGGCAAGGGATTTGGGTGCGTGGTTAAGAGAGCACTACGTACEST: gi|100448929|gb|CJ973228.1|CJ973228
genomic: TGGAAAATTCTTTCGACAGAAGTATCCGTGGGGAAATCTCACTACCAAGGgtaggctacc ... aatgtgacagGTGCGCAGCAGGCAAGGGATTTGGGTGCGTGGTTAAGAGAGCACTACGTAC
EST: TGGAAAATTCTTTCGACAGAAGTATCCGTGGGGAAATCTCACTACCAAGG GTGCGCAGCAGGCAAGGGATTTGGGTGCGTGGTTAAGAGAGCACTACGTACEST: gi|100365130|gb|BY966825.1|BY966825
genomic: TGGAAAATTCTTTCGACAGAAGTATCCGTGGGGAAATCTCACTACCAAGGgtaggctacc ... aatgtgacagGTGCGCAGCAGGCAAGGGATTTGGGTGCGTGGTTAAGAGAGCACTACGTAC
EST: TGGAAAATTCTTTCGACAGAAGTATCCGTGGGGAAATCTCACTACCAAGG GTGCGCAGCAGGCAAGGGATTTGGGTGCGTGGTTAAGAGAGCACTACGTAC
genomic: TGGAAAATTCTTTCGACAGAAGTATCCGTGGGGAAATCTCACTACCAAGGgtaggctacc ... aatgtgacagGTGCGCAGCAGGCAAGGGATTTGGGTGCGTGGTTAAGAGAGCACTACGTAC
aactcgacatcggaaaaccctagttcttaaaaggttgggagaagaaatgtgacagGTGCGCAGCAGGCAAGGGATTTGGGTGCGTGGTTAAGAGAGCACTACGTACCCCAGTTCAGCAACCCTGTGGGAAAGGTCAGGCTTCAGGAGGCGCCTGA
ttgtaac putative branch site (score: 2)
ttcttaaaa TA-rich tract