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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgaatcttatctttctattggtgtttgatgtggaaaatgaaatgcgacactcttgaggcgagtctaattcaattgtagcaatttttagtggcatgaggcatatcttttatctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAGGCAAGCCGTAGATATTTCCCCTCTGCGAAGGGTTAACCAGGCTATTTAC

Basic information

species Physcomitrella patens
transcript PP1S400_33V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G156673_T02 (Zea mays), 3'ss of exon 1
gtttgaatcttatctttctattggtgtttgatgtggaaaatgaaatgcgacactcttgaggcgagtctaattcaattgtagcaatttttagtggcatgaggcatatcttttatctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAGGCAAGCCGTAGATATTTCCCCTCTGCGAAGGGTTAACCAGGCTATTTAC
                   ||  |  |||||| ||| |||  | |     || | |  ||   |  |   ||   | ||   |  |   | ||   ||| |     || || |||  ||||||||||||||||| |||||||| ||||||||||| ||||| ||| | |||||||| ||||| ||||| || || ||| | ||||| |||||||| || |||
----------------gtcatgtgcttttgatatgggaaactatagct--caatatatagctta--catgttgggtcgtgagatgtgaaactgttgtgatgtgctgctattgtct--tgcagTGGACCCCGTGAGGATGCCACCCGTATTGGTTCCGCTGGTGTTGTGAGGAGGCAGGCCGTGGATATCTCACCCCTGAGGAGGGTGAACCAGGCCATCTAC

upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G078985_T01 (Zea mays), 3'ss of exon 2
gtttgaatcttatctttctattggtgtttgatgtggaaaatgaaatgcgacactcttgaggcgagtctaattcaattgtagcaatttttagtggcatgaggcatatcttttatctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAGGCAAGCCGTAGATATTTCCCCTCTGCGAAGGGTTAACCAGGCTATTTAC
                  |||  |  | |||  ||  || |  ||  | | ||| ||||    |  |   ||   |  |   |  |   | |||  |   |      | || |||  ||||||||||| ||||| |||||||| ||||||||||| ||||| ||| | || ||||| || || ||||| || || ||| ||||||| |||||||| || |||
-----------------ttatgtgc-tatgagatgtcaactataactcaa-actattga--ttacacatgttggctcttgagatgtcaaactggtgttctgtgctgatattgtct-ttgcagTGGACCACGTGAGGATGCCACCCGTATTGGTTCAGCTGGTGTTGTGAGAAGGCAGGCTGTGGATATCTCACCCCTGAGAAGGGTGAACCAGGCCATCTAC

upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA12G32850.1 (Glycine max), 3'ss of exon 3
gtttgaatcttatctttctattggtgtttgatgtgga---aaatgaaatgcgacactcttgaggcgagtctaattcaattgtagcaatttttagtggcatgaggcatatcttttatctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAGGCAAGCCGTAGATATTTCCCCTCTGCGAAGGGTTAACCAGGCTATTTAC
                  |    ||  |||||||| |   | ||||| ||  |||||    |    | | |||   | |   || ||||| |  |    |   |  | | |||| | |  | |||||| || ||||||||||| ||| | |||||||||||||||||| | |||||||| || || |||||||| || || ||  | || || |||||||| || 
-----------------tttgcagttcttgatgtgcatctatatgaattg-aacact---aaatttactttaa---agtgtcagtaatttatcttactgttttgattgtgttttgtttatt-cagTGGTCCTCGTGAAGATGCAACAAGAATTGGTTCTGCTGGAGTTGTAAGGAGGCAGGCTGTGGATATTTCACCCCTTCGGCGTGTGAATCAGGCTATATAT

upper sequence: PP1S400_33V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: EFJ18003 (Selaginella moellendorffii), 3'ss of exon 3
gtttgaatcttatctttctattggtgtttgatgtggaaaatgaaatgcgacactcttgaggcgagtctaattcaattgtagcaatttttagtggcatgaggcatatcttttatctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAGGCAAGCCGTAGATATTTCCCCTCTGCGAAGGGTTAACCAGGCTATTTAC
                                              |        || | | |||    |||| |      || ||||         |     | ||| ||      |||||||| || || |||||||| || ||||||||||| ||||| ||||||||| | || || || ||||| |||||| || |  | || || ||||| ||||||
----------------------------------------------gtatagaggttcaagtgagcaggattccag---gacagtttt---------ggattttctctctttctctttgcagTGGTCCTCGCGAAGATGCTACCCGTATTGGTTCCGCTGGTGTTATCAGGCGTCAGGCTGTGGATATCTCCCCTTTGAGGCGTGTCAATCAGGCGATTTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208385606|gb|DC948965.1|DC948965
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGATTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|162204682|gb|FC380896.1|FC380896
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGACGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTTTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|37823857|gb|BJ581923.1|BJ581923
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|67575030|gb|BJ947854.1|BJ947854
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|162226409|gb|FC402402.1|FC402402
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGACGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|162224908|gb|FC401116.1|FC401116
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGACGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|162246678|gb|FC425271.1|FC425271
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGACGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|208357916|gb|DC934835.1|DC934835
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGATTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|162224019|gb|FC400377.1|FC400377
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGACGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|67712612|gb|BJ966061.1|BJ966061
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|67724322|gb|BJ974581.1|BJ974581
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|67698472|gb|BJ958705.1|BJ958705
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|67728065|gb|BJ978324.1|BJ978324
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|67712655|gb|BJ966104.1|BJ966104
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|67719803|gb|BJ970062.1|BJ970062
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|18372645|gb|BJ204247.1|BJ204247
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|162204683|gb|FC380897.1|FC380897
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGACGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|18344654|gb|BJ176695.1|BJ176695
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|18358968|gb|BJ191028.1|BJ191028
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|67693895|gb|BJ954128.1|BJ954128
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|67717985|gb|BJ968244.1|BJ968244
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|162237857|gb|FC412497.1|FC412497
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGACGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|162224018|gb|FC400376.1|FC400376
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGACGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|18362407|gb|BJ194477.1|BJ194477
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|162237856|gb|FC412496.1|FC412496
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGACGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|162246677|gb|FC425270.1|FC425270
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGACGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|18365457|gb|BJ197533.1|BJ197533
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|162258530|gb|FC434745.1|FC434745
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|67570610|gb|BJ943434.1|BJ943434
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|67700132|gb|BJ960365.1|BJ960365
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|37851079|gb|BJ609087.1|BJ609087
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|208373799|gb|DC936584.1|DC936584
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|18370250|gb|BJ201852.1|BJ201852
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|162224907|gb|FC401115.1|FC401115
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGACGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|67720612|gb|BJ970871.1|BJ970871
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
EST: gi|37852163|gb|BJ610171.1|BJ610171
EST:     CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAG                         TGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG
genomic: CTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 33 (downstream exon)
Score: 35

AGTTGATGGCTGTCCGCATTGTGAAGCACGCTATGGAGATCATTCACCTTCTGACTGATCAGAACCCCATCCAGGTCATCGTTGATGCTATCATCAACAGgtttgaatct ... tctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAGGCAAGCCGTAGATATTTCCCCTCTGCGAAGGGTTAACCAGGCTATTTAC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattcaattgtagcaatttttagtggcatgaggcatatcttttatctgctgcagTGGACCCCGTGAAGATGCCACACGTATTGGTTCTGCTGGAGTTATCAGGAGGCAAGCCGTAGATATTTCCCCTCTGCGAAGGGTTAACCAGGCTATTTAC
 gtctaat  putative branch site (score: 35)
                                      tcttttatct  putative PPT
                                   atatcttttat  TA-rich tract