Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agccagatgtaagatgcaggcaaccatatcaagtactcgactgctggatctagttttcgtagcaacacctatattttgaattgcctgttgtttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTTGTAGTGATGCTAAGGAACAGGCTCAAGTATGCATTGACCTACCGTGAAG

Basic information

species Physcomitrella patens
transcript PP1S39_422V6.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S39_422V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G542753_T01 (Zea mays), 3'ss of exon 6
agccagatgtaagatgcaggcaaccatatcaagtactcgactgctggatctagttttcgtagcaaca---cctatattttgaattg-cctgttgtttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTTGTAGTGATGCTAAGGAACAGGCTCAAGTATGCATTGACCTACCGTGAAG
             | | |  |||   | || ||   | |        ||||  | | | |  | |     |  ||  ||    |||  || || |||     |||| |||||||||||| | ||| | ||||||   | ||| ||  | |||||  |  | ||  | ||||||||||||||||||||| |||| |||||||| |
-----------gtaagtaaacaatattttctagctttggtacctacaatcttctgtacttccccatttgtctgatgcttcaggttggtctttttttttctgtagGCTCCCAAGCCATCTTCTGGATCTCACAAGTCCAAGGAGTGCCTGCCTCTGATCCTCATCATCAGGAACAGGCTCAAGTATGCACTGACGTACCGTGAGG

upper sequence: PP1S39_422V6.2 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GRMZM2G301096_T01 (Zea mays), 3'ss of exon 3
agccagatgtaagatgcaggcaaccatatcaagtactcgactgctggatctagttttcgtagcaacacct---atattttgaattgcctgttgtttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTTGTAGTGATGCTAAGGAACAGGCTCAAGTATGCATTGACCTACCGTGAAG
             | | |  |||   | || ||   | |        ||||  | | | |  | |    |   ||  ||    |||    || ||| | | |||| |||||||||||| | ||||| ||||||   ||||| ||  | ||| |  |  | ||  | ||||||||||||||||||||| |||| ||||||||  
-----------gtaagtaaacaatattttctagctttggtacctacaatcttctgtacttccccatttgtctgatgcttcaggttggtctttttttctgt-agGCTCCCAAGCCATCTTCTGGACCTCACAAGTCCAGGGAGTGCCTGCCTTTGATCCTCATCATCAGGAACAGGCTCAAGTATGCACTGACGTACCGTGAG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208359187|gb|DC934690.1|DC934690
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208360509|gb|DC930264.1|DC930264
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162154350|gb|FC330689.1|FC330689
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162278196|gb|FC454431.1|FC454431
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162242260|gb|FC416068.1|FC416068
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162276378|gb|FC452134.1|FC452134
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67718472|gb|BJ968731.1|BJ968731
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67508494|gb|BJ941359.1|BJ941359
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|19785991|gb|BQ040424.1|BQ040424
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162273105|gb|FC447799.1|FC447799
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|19788282|gb|BQ040749.1|BQ040749
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|19778892|gb|BQ039373.1|BQ039373
EST:     AGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: AGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|100442819|gb|BY963314.1|BY963314
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208384703|gb|DC915264.1|DC915264
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|100401651|gb|BY954638.1|BY954638
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67726804|gb|BJ977063.1|BJ977063
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67701936|gb|BJ962169.1|BJ962169
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208372480|gb|DC940769.1|DC940769
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|18368491|gb|BJ200576.1|BJ200576
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208387351|gb|DC933102.1|DC933102
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162244481|gb|FC422654.1|FC422654
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162270733|gb|FC446346.1|FC446346
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208375348|gb|DC940458.1|DC940458
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|18328286|gb|BJ160290.1|BJ160290
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67717249|gb|BJ967508.1|BJ967508
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67574528|gb|BJ947352.1|BJ947352
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67726924|gb|BJ977183.1|BJ977183
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|100431604|gb|BY960281.1|BY960281
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67709828|gb|BJ965644.1|BJ965644
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208352124|gb|DC906269.1|DC906269
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67703238|gb|BJ963471.1|BJ963471
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|18330600|gb|BJ162606.1|BJ162606
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|19783840|gb|BQ040078.1|BQ040078
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67716544|gb|BJ966804.1|BJ966804
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|18356288|gb|BJ188347.1|BJ188347
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|19789420|gb|BQ041298.1|BQ041298
EST:     GCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208372338|gb|DC936468.1|DC936468
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162262040|gb|FC436847.1|FC436847
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|18371578|gb|BJ203180.1|BJ203180
EST:     GACTGAATGCCCCTANGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|6102370|gb|AW126840.1|AW126840
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208375314|gb|DC940452.1|DC940452
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208388018|gb|DC933138.1|DC933138
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|100410121|gb|BY974421.1|BY974421
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208381962|gb|DC923458.1|DC923458
EST:     ACTG-ATGCCCCTAGGCA-TNGATGCTNGACAAG-TGGGTGGTGCA-TC                         GCCCCCAAGCCATCTCCA-GACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: ACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67716220|gb|BJ966480.1|BJ966480
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208353141|gb|DC910150.1|DC910150
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162198062|gb|FC372089.1|FC372089
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67720011|gb|BJ970270.1|BJ970270
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162274815|gb|FC450842.1|FC450842
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208379834|gb|DC911719.1|DC911719
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208363834|gb|DC943291.1|DC943291
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208391309|gb|DC938199.1|DC938199
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208344652|gb|DC905101.1|DC905101
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|18373265|gb|BJ204867.1|BJ204867
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208365611|gb|DC935736.1|DC935736
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208393421|gb|DC942505.1|DC942505
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162259066|gb|FC435151.1|FC435151
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162258802|gb|FC434809.1|FC434809
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208395596|gb|DC929011.1|DC929011
EST:     GACTGAATGCCCCTAGGCA-TGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67712701|gb|BJ966150.1|BJ966150
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208387833|gb|DC941402.1|DC941402
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162262039|gb|FC436846.1|FC436846
EST:     CAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: CAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67701993|gb|BJ962226.1|BJ962226
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|100387796|gb|BY970541.1|BY970541
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|18327413|gb|BJ159415.1|BJ159415
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67701654|gb|BJ961887.1|BJ961887
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|100427291|gb|BY959073.1|BY959073
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|208374275|gb|DC940660.1|DC940660
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|18350121|gb|BJ182172.1|BJ182172
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162220028|gb|FC395374.1|FC395374
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|162207391|gb|FC383948.1|FC383948
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
EST: gi|67717734|gb|BJ967993.1|BJ967993
EST:     GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTC                         GCCCCCAAGCCGTCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT
genomic: GACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 83

GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttttg ... tttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTTGTAGTGATGCTAAGGAACAGGCTCAAGTATGCATTGACCTACCGTGAAG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatctagttttcgtagcaacacctatattttgaattgcctgttgtttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTTGTAGTGATGCTAAGGAACAGGCTCAAGTATGCATTGACCTACCGTGAAG
                        tatattttgaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agccagatgtaagatgcaggcaaccatatcaagtactcgactgctggatctagttttcgtagcaacacctatattttgaattgcctgttgtttatatcagGCCCCCAAGCCATCTCCAGGACCACACAAGGAGAGGGAATGTTTACCTCTTGTAGTGATGCTAAGGAACAGGCTCAAGTATGCATTGACCTACCGTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA