1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aggtagttcgtgtaggttgaatttgtttttttggaaatggacacaattaggaacaattgtcttcgtcttccttaagccacatgaattactgaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACGATCCTAATGTTGGGACTGGCTTGGTTGGTGCCCCAGCATGTGGAGATG
species | Physcomitrella patens |
transcript | PP1S39_352V6.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|18358277|gb|BJ190336.1|BJ190336
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|208364508|gb|DC930898.1|DC930898
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|100367222|gb|BY984845.1|BY984845
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTGGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|18372939|gb|BJ204541.1|BJ204541
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|18363292|gb|BJ195364.1|BJ195364
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|18330965|gb|BJ162971.1|BJ162971
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: GTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|100401447|gb|BY991007.1|BY991007
genomic: GTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|162269290|gb|FC445821.1|FC445821
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|162232570|gb|FC408913.1|FC408913
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|100445500|gb|CJ975649.1|CJ975649
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|162236415|gb|FC412782.1|FC412782
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|67573048|gb|BJ945872.1|BJ945872
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|18332193|gb|BJ164206.1|BJ164206
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|162273917|gb|FC450056.1|FC450056
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|18332343|gb|BJ164356.1|BJ164356
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|162240736|gb|FC417459.1|FC417459
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACEST: gi|100442006|gb|BY981229.1|BY981229
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
EST: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAG GTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
genomic: ACGCTGCTCGGGGAGCTCTTGTGCCTGGAGTGAGGAGTTATCATGAGAAGgtgtgtattg ... gaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAAC
attaggaacaattgtcttcgtcttccttaagccacatgaattactgaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACGATCCTAATGTTGGGACTGGCTTGGTTGGTGCCCCAGCATGTGGAGATG
atgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtagttcgtgtaggttgaatttgtttttttggaaatggacacaattaggaacaattgtcttcgtcttccttaagccacatgaattactgaaactgcagGTTGTAGATCATTACGACAACCCTCGCAATGTTGGATCTTTCGACAAGAACGATCCTAATGTTGGGACTGGCTTGGTTGGTGCCCCAGCATGTGGAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG