1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtcaggatttccaagtatgtactattcaatggtatgagatgcgaatttgtagattaggtggtacatgttattgataagggtatcgatatattcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCACTATGGCGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGG
species | Physcomitrella patens |
transcript | PP1S39_347V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|67697970|gb|BJ958203.1|BJ958203
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: CTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|7067446|gb|AW497301.1|AW497301
genomic: CTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|67727381|gb|BJ977640.1|BJ977640
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|208349353|gb|DC910398.1|DC910398
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|208391138|gb|DC933483.1|DC933483
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|208386318|gb|DC932814.1|DC932814
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|208365548|gb|DC954789.1|DC954789
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|67693026|gb|BJ953259.1|BJ953259
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: GACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|208397582|gb|DC912200.1|DC912200
genomic: GACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCNCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|7148045|gb|AW509967.1|AW509967
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|22132720|gb|BQ827304.1|BQ827304
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|208387071|gb|DC941243.1|DC941243
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|208388784|gb|DC941793.1|DC941793
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|208360433|gb|DC930800.1|DC930800
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|208395764|gb|DC924230.1|DC924230
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGACTCGCGTGCCAGCATGGGCAANTACATTT CCTCGCAATCNGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|208358674|gb|DC957586.1|DC957586
genomic: TGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|19785617|gb|BQ040349.1|BQ040349
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|208374958|gb|DC956382.1|DC956382
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|208368061|gb|DC947621.1|DC947621
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: GCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|67569758|gb|BJ942582.1|BJ942582
genomic: GCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|67574553|gb|BJ947377.1|BJ947377
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|208387740|gb|DC937305.1|DC937305
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|67717513|gb|BJ967772.1|BJ967772
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|67719054|gb|BJ969313.1|BJ969313
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|18326573|gb|BJ158572.1|BJ158572
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|2956961|gb|AJ225524.1|AJ225524
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCAEST: gi|208359388|gb|DC954241.1|DC954241
genomic: TGGCGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
EST: CGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTT CCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
genomic: CGTCATCGTGGCTGCTGACTCGCGTGCCAGCATGGGCAACTACATTTgtatgtccgc ... ttcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCA
tttgtagattaggtggtacatgttattgataagggtatcgatatattcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCACTATGGCGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGG
tattgat putative branch site (score: 20)
ttattgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaggatttccaagtatgtactattcaatggtatgagatgcgaatttgtagattaggtggtacatgttattgataagggtatcgatatattcatggcagCCTCGCAATCGGTGAAGAAAATTCTGGAGATCAACCCCTACTTGTTGGGCACTATGGCGGGAGGTGCCGCTGATTGTCAGTTTTGGCAACGGAATCTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT