1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatagtaacgagggttttttagttattttgcgttgggctgttcttgattgttattggggaagctctgaatttcaacaatttggttaaatttcacgtgcagGGAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTTTTTGGGTGAAAAATTTGCAAGAGTGATGATAGTTCTGTTAGCATCTTTT
species | Physcomitrella patens |
transcript | PP1S395_51V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCAAACGGATGGTGTGTTCCTCTGGTCTATATTGACTACATTCCTTCAG GGAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTTEST: gi|208392516|gb|DC933930.1|DC933930
genomic: CGCAAACGGATGGTGTGTTCCTCTGGTCTATATTGACTACATTCCTTCAGgtacgctcac ... tcacgtgcagGGAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTT
EST: CGCAAACGGATGGTGTGTTCCTCTGGTCTATATTGACTACATTCCTTCAG GGAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTTEST: gi|208392081|gb|DC941929.1|DC941929
genomic: CGCAAACGGATGGTGTGTTCCTCTGGTCTATATTGACTACATTCCTTCAGgtacgctcac ... tcacgtgcagGGAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTT
EST: CGCAAACGGATGGTGTGTTCCTCTGGTCTATATTGACTACATTCCTTCAG GGAAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTEST: gi|18366626|gb|BJ198705.1|BJ198705
genomic: CGCAAACGGATGGTGTGTTCCTCTGGTCTATATTGACTACATTCCTTCAGgtacgctcac ... tcacgtgcagGG-AAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCT
EST: CGCAAACGGATGGTGTGTTCCTCTGGTCTATATTGACTACATTCCTTCAG GGAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTTEST: gi|100393226|gb|BY989784.1|BY989784
genomic: CGCAAACGGATGGTGTGTTCCTCTGGTCTATATTGACTACATTCCTTCAGgtacgctcac ... tcacgtgcagGGAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTT
EST: CGCAAACGGATGGTGTGTTCCTCTGGTCTATATTGACTACATTCCTTCAG GGAAAATTTGGAAAGTTCATGAGATGATTGGTGCTTGAGGAGGGCGGTCTTEST: gi|18352325|gb|BJ184379.1|BJ184379
genomic: CGCAAACGGATGGTGTGTTCCTCTGGTCTATATTGACTACATTCCTTCAGgtacgctcac ... tcacgtgcagGGAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTT
EST: CGCAAACGGATGGTGTGTTCCTCTGGTCTATATTGACTACATTCCTTCAG GGAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTTEST: gi|18345392|gb|BJ177435.1|BJ177435
genomic: CGCAAACGGATGGTGTGTTCCTCTGGTCTATATTGACTACATTCCTTCAGgtacgctcac ... tcacgtgcagGGAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTT
EST: CGCAAACGGATGGTGTGTTCCTCTGGTCTATATTGACTACATTCCTTCAG GGAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTT
genomic: CGCAAACGGATGGTGTGTTCCTCTGGTCTATATTGACTACATTCCTTCAGgtacgctcac ... tcacgtgcagGGAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTT
gattgttattggggaagctctgaatttcaacaatttggttaaatttcacgtgcagGGAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTTTTTGGGTGAAAAATTTGCAAGAGTGATGATAGTTCTGTTAGCATCTTTT
tcttgat putative branch site (score: 4)
aatttggttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatagtaacgagggttttttagttattttgcgttgggctgttcttgattgttattggggaagctctgaatttcaacaatttggttaaatttcacgtgcagGGAAAATTTGGAAAGTTCATGAGATGATTGGAGCTTGAGGAGGGCGGTCTTTTTGGGTGAAAAATTTGCAAGAGTGATGATAGTTCTGTTAGCATCTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA