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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatcttctgttctggctgtcttttgtgcatctcgagtgtattttcctgtttgggaactttataatcttaaagatttaccatgaattgctcaaaattatgttacagaacttggtgttgaatgcttctgttgatggttttttgacagGATGCAAGACCAATTGGTGTAGGGAGCTCTTATTCCAACGATCGGCATGGTTATGATAGGCATCATGAATTGAGACCGCCTAAATATGACAGGCCTTCGT

Basic information

species Physcomitrella patens
transcript PP1S395_19V6.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18343057|gb|BJ175095.1|BJ175095
EST:     ACATGCCACGACAGAGTTCTGGAGGTTGGCACGGCCCCAATATTTTTGAT                         GATGCAAGACCAATTGGTGTAGGGAGCTCTTATTCCAACGATCGGCATGGT
genomic: ACATGCCACGACAGAGTTCTGGAGGTTGGCACGGCCCCAATATTTTTGATgtaagcatct ... tttttgacagGATGCAAGACCAATTGGTGTAGGGAGCTCTTATTCCAACGATCGGCATGGT
EST: gi|162191987|gb|FC367200.1|FC367200
EST:     ACATGCCACGACAGAGTTCTGGAGGTTGGCACGGCCCCAATATTTTTGAT                         GATGCAAGACCAATTGGTGTAGGGAGCTCTTATTCCAACGATCGGCATGGT
genomic: ACATGCCACGACAGAGTTCTGGAGGTTGGCACGGCCCCAATATTTTTGATgtaagcatct ... tttttgacagGATGCAAGACCAATTGGTGTAGGGAGCTCTTATTCCAACGATCGGCATGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaattatgttacagaacttggtgttgaatgcttctgttgatggttttttgacagGATGCAAGACCAATTGGTGTAGGGAGCTCTTATTCCAACGATCGGCATGGTTATGATAGGCATCATGAATTGAGACCGCCTAAATATGACAGGCCTTCGT
                                   tgttgat  putative branch site (score: 4)
                                            tttttt  putative PPT
                                            ttttttga  TA-rich tract