1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ccttcatggatacgctgataggatttaggatttctgttcctattttccctgatctcaacaattataatttatcgtaatcctatttttcgggtggcttcagGTTGAGGATTGGCATTTTCACTACGTGAAAGCAAGTAGTGCTTTGCATGATAGGGTTGGCTTGATGCGCAATGCCGCAGAACTGGTGGAGTGCAATCTTA
species | Physcomitrella patens |
transcript | PP1S38_368V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGGTTTGCGGACACTTGTAGTAGCATCAAAGGTGCTTACTCGGAAAGAG GTTGAGGATTGGCATTTTCACTACGTGAAAGCAAGTAGTGCTTTGCATGATEST: gi|162179489|gb|FC356529.1|FC356529
genomic: AAGGTTTGCGGACACTTGTAGTAGCATCAAAGGTGCTTACTCGGAAAGAGgtaaaaccat ... gtggcttcagGTTGAGGATTGGCATTTTCACTACGTGAAAGCAAGTAGTGCTTTGCATGAT
EST: AAGGTTTGCGGACACTTGTAGTAGCATCAAAGGTGCTTACTCGGAAAGAG GTTGAGGATTGGCATTTTCACTACGTGAAAGCAAGTAGTGCTTTGCATGATEST: gi|162153899|gb|FC329406.1|FC329406
genomic: AAGGTTTGCGGACACTTGTAGTAGCATCAAAGGTGCTTACTCGGAAAGAGgtaaaaccat ... gtggcttcagGTTGAGGATTGGCATTTTCACTACGTGAAAGCAAGTAGTGCTTTGCATGAT
EST: AAGGTTTGCGGACACTTGTAGTAGCATCAAAGGTGCTTACTCGGAAAGAG GTTGAGGATTGGCATTTTCACTACGTGAAAGCAAGTAGTGCTTTGCATGAT
genomic: AAGGTTTGCGGACACTTGTAGTAGCATCAAAGGTGCTTACTCGGAAAGAGgtaaaaccat ... gtggcttcagGTTGAGGATTGGCATTTTCACTACGTGAAAGCAAGTAGTGCTTTGCATGAT
tccctgatctcaacaattataatttatcgtaatcctatttttcgggtggcttcagGTTGAGGATTGGCATTTTCACTACGTGAAAGCAAGTAGTGCTTTGCATGATAGGGTTGGCTTGATGCGCAATGCCGCAGAACTGGTGGAGTGCAATCTTA
ccctgat putative branch site (score: 6)
aattataatttatcgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttcatggatacgctgataggatttaggatttctgttcctattttccctgatctcaacaattataatttatcgtaatcctatttttcgggtggcttcagGTTGAGGATTGGCATTTTCACTACGTGAAAGCAAGTAGTGCTTTGCATGATAGGGTTGGCTTGATGCGCAATGCCGCAGAACTGGTGGAGTGCAATCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG