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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agataggctcaaaacgtagccgaattcggaacaccaaactcattaactttgggattcttgatagcaatgcattttgtttttgagtgtctgtttgcaacagCTGCAGTGCACGGCTCCAGAAACTTGCAGACCCACTCCCAGACTGAGGTTTTGGATTCTAAGAATCTGCGCATCAAG

Basic information

species Physcomitrella patens
transcript PP1S38_328V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162152196|gb|FC328175.1|FC328175
EST:     TTAAAGATTGTGATAAGCATTTGCCATGGGCTGTACATCCTCTTCACATG                         CTGCAGTGCACGGCTCCAGAAACTTGCAGACCCACTCCCAGACTGAGGTTT
genomic: TTAAAGATTGTGATAAGCATTTGCCATGGGCTGTACATCCTCTTCACATGgtacgtttct ... tttgcaacagCTGCAGTGCACGGCTCCAGAAACTTGCAGACCCACTCCCAGACTGAGGTTT
EST: gi|208397759|gb|DC911996.1|DC911996
EST:     TTAAAGATTGTGATAAGCATTTGCCATGGGCTGTACATCCTCTTCACATG                         CTGCAGTGCACGGCTCCAGAAACTTGCAGACCCACTCCCAGACTGAGGTTT
genomic: TTAAAGATTGTGATAAGCATTTGCCATGGGCTGTACATCCTCTTCACATGgtacgtttct ... tttgcaacagCTGCAGTGCACGGCTCCAGAAACTTGCAGACCCACTCCCAGACTGAGGTTT
EST: gi|162267081|gb|FC443312.1|FC443312
EST:     TTAAAGATTGTGATAAGCATTTGCCATGGGCTGTACATCCTCTTCACATG                         CTGCAGTGCACGGCTCCAGAAACTTGCAGACCCACTCCCAGACTGAGGTTT
genomic: TTAAAGATTGTGATAAGCATTTGCCATGGGCTGTACATCCTCTTCACATGgtacgtttct ... tttgcaacagCTGCAGTGCACGGCTCCAGAAACTTGCAGACCCACTCCCAGACTGAGGTTT
EST: gi|100370853|gb|BY948549.1|BY948549
EST:     TTAAAGATTGTGATAAGCATTTGCCATGGGCTGTACATCCTCTTCACATG                         CTGCAGTGCACGGCTCCAGAAACTTGCAGACCCACCCCCAGACTGAGGTTT
genomic: TTAAAGATTGTGATAAGCATTTGCCATGGGCTGTACATCCTCTTCACATGgtacgtttct ... tttgcaacagCTGCAGTGCACGGCTCCAGAAACTTGCAGACCCACTCCCAGACTGAGGTTT
EST: gi|100440896|gb|BY962384.1|BY962384
EST:     TTAAAGATTGTGATAAGCATTTGCCATGGGCTGTACATCCTCTTCACATG                         CTGCAGTGCACGGCTCCAGAAACTTGCAGACCCACTCCCAGACTGAGGTTT
genomic: TTAAAGATTGTGATAAGCATTTGCCATGGGCTGTACATCCTCTTCACATGgtacgtttct ... tttgcaacagCTGCAGTGCACGGCTCCAGAAACTTGCAGACCCACTCCCAGACTGAGGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttgggattcttgatagcaatgcattttgtttttgagtgtctgtttgcaacagCTGCAGTGCACGGCTCCAGAAACTTGCAGACCCACTCCCAGACTGAGGTTTTGGATTCTAAGAATCTGCGCATCAAG
                                         tctgttt  CT-rich tract
                         attttgttttt  TA-rich tract