1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttggctttgtcatttgtttacatgttcaaatactatttaagtagatgtgttataatttattttttttatttttgacgtcaatgcgctggttgtctttagGATTATTACGCAACACTTGGTGTGGCGAAAACTGCTGACAAGTCGGAGATTAAAAGCG
species | Physcomitrella patens |
transcript | PP1S386_29V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGGCATCACCAGCGACGAAACGGAAGCTTTGTAGTTTGCGCTGATGCT GATTATTACGCAACACTTGGTGTGGCGAAAACTGCTGEST: gi|162162250|gb|FC338032.1|FC338032
genomic: CAAGGCATCACCAGCGACGAAACGGAAGCTTTGTAGTTTGCGCTGATGCTgtaagctttt ... ttgtctttagGATTATTACGCAACACTTGGTGTGGCGAAAACTGCTG
EST: CAAGGCATCACCAGCGACGAAACGGAAGCTTTGTAGTTTGCGCTGATGCT GATTATTACGCAACACTTGGTGTGGCGAAAACTGCTGACAAGTCGGAGATTEST: gi|162154385|gb|FC330192.1|FC330192
genomic: CAAGGCATCACCAGCGACGAAACGGAAGCTTTGTAGTTTGCGCTGATGCTgtaagctttt ... ttgtctttagGATTATTACGCAACACTTGGTGTGGCGAAAACTGCTGACAAGTCGGAGATT
EST: CAAGGCATCACCAGCGACGAAACGGAAGCTTTGTAGTTTGCGCTGATGCT GATTATTACGCAACACTTGGTGTGGCGAAAACTGCTGACAAGTCGGAGATTEST: gi|18359765|gb|BJ191826.1|BJ191826
genomic: CAAGGCATCACCAGCGACGAAACGGAAGCTTTGTAGTTTGCGCTGATGCTgtaagctttt ... ttgtctttagGATTATTACGCAACACTTGGTGTGGCGAAAACTGCTGACAAGTCGGAGATT
EST: CAAGGCATCACCAGCGACGAAACGGAAGCTTTGTAGTTTGCGCTGATGCT GATTATTACGCAACACTTGGTGT
genomic: CAAGGCATCACCAGCGACGAAACGGAAGCTTTGTAGTTTGCGCTGATGCTgtaagctttt ... ttgtctttagGATTATTACGCAACACTTGGTGT
atgtgttataatttattttttttatttttgacgtcaatgcgctggttgtctttagGATTATTACGCAACACTTGGTGTGGCGAAAACTGCTGACAAGTCGGAGATTAAAAGCG
ttttgac putative branch site (score: 6)
ttgtcttt putative PPT
ttataatttatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttggctttgtcatttgtttacatgttcaaatactatttaagtagatgtgttataatttattttttttatttttgacgtcaatgcgctggttgtctttagGATTATTACGCAACACTTGGTGTGGCGAAAACTGCTGACAAGTCGGAGATTAAAAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT