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...taaactttctttgcatctgtgtgatgacacatttggacaagagctgttacgagagattggctataaactgtttcctctatgtgacttgttttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
species | Physcomitrella patens |
transcript | PP1S37_33V6.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|162194038|gb|FC370213.1|FC370213
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|162202113|gb|FC378034.1|FC378034
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|18367435|gb|BJ199518.1|BJ199518
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|100452631|gb|CJ975366.1|CJ975366
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|67574071|gb|BJ946895.1|BJ946895
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|208373915|gb|DC940426.1|DC940426
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|18343965|gb|BJ176004.1|BJ176004
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|18346086|gb|BJ178129.1|BJ178129
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|208398177|gb|DC908406.1|DC908406
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|100427449|gb|BY977503.1|BY977503
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|162176173|gb|FC351915.1|FC351915
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|208362586|gb|DC939510.1|DC939510
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|162152562|gb|FC328840.1|FC328840
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|162173170|gb|FC349237.1|FC349237
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGGEST: gi|162258522|gb|FC434737.1|FC434737
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
EST: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCG GACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
genomic: CTGCACGATGGTCCCGGTATTATCAAGCCTCATCGGCTGCCTCAAATGCGgtatgtatca ... ttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
gttacgagagattggctataaactgtttcctctatgtgacttgttttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
cttgtttt CT-rich tract
tataaact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaactttctttgcatctgtgtgatgacacatttggacaagagctgttacgagagattggctataaactgtttcctctatgtgacttgttttgcatgcagGACCTGCGAGCCAAGATTGCGGAAATGGTCCCAGATGAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG