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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gagtatgatattatgtaccgagtaaggctcgtacattagagcattgaatgccttttaagtgttccaacataaacctcggggtatggaattgcttcctcagGTCACGTGTTTGATGTCATCAACGCACTCCCAAAGACTGCACATCCCATGACCCAGTTAACGACAGGCATCATGGCCCTTCAG

Basic information

species Physcomitrella patens
transcript PP1S37_33V6.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162233299|gb|FC409849.1|FC409849
EST:     GCAAGTCAATGCACTGAGTGAAGATTTGCGATCTCGCGCAAAAATCCCAG                         GTCACGTGTTTGATGTCATCAACGCACTCCCAAAGACTGCACATCCCATGA
genomic: GCAAGTCAATGCACTGAGTGAAGATTTGCGATCTCGCGCAAAAATCCCAGgtatagggta ... gcttcctcagGTCACGTGTTTGATGTCATCAACGCACTCCCAAAGACTGCACATCCCATGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatgccttttaagtgttccaacataaacctcggggtatggaattgcttcctcagGTCACGTGTTTGATGTCATCAACGCACTCCCAAAGACTGCACATCCCATGACCCAGTTAACGACAGGCATCATGGCCCTTCAG
                                           ttgcttcctc  CT-rich tract
       ttttaagt  TA-rich tract