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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tactaccttgggacattgcagttacgcgtattatgtgtgtaagattctcgtgtatgatcggtctagtttgttgttagcgaaccttgacctaccctttcagACCAACAAGGATATTGTTGCGCAAATCACCTATGCCACTCTTGCTGGAGATATTGTTCTTACCTCTGCCTACGCCCATGAGCTCCCTCGGTATGGTCTGA

Basic information

species Physcomitrella patens
transcript PP1S371_31V6.2
intron # 2
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208382974|gb|DC927724.1|DC927724
EST:     AAGATAAGAACAAGTACAACACCCCCAAGTACCGTTTCGTTGTGCGGTTC                         ACCAACAAGGATATTGTTGCGCAAATCACCTATGCCACTCTTGCTGGAGAT
genomic: AAGATAAGAACAAGTACAACACCCCCAAGTACCGTTTCGTTGTGCGGTTCgtatcctttg ... accctttcagACCAACAAGGATATTGTTGCGCAAATCACCTATGCCACTCTTGCTGGAGAT
EST: gi|67577808|gb|BJ949975.1|BJ949975
EST:     AAGATAAGAACAAGTACAACACCCCCAAGTACCGTTTCGTTGTGCGGTTC                         ACCAACAAGGATATTGTTGCGCAAATCACCTATGCCACTCTTGCTGGAGAT
genomic: AAGATAAGAACAAGTACAACACCCCCAAGTACCGTTTCGTTGTGCGGTTCgtatcctttg ... accctttcagACCAACAAGGATATTGTTGCGCAAATCACCTATGCCACTCTTGCTGGAGAT
EST: gi|208373862|gb|DC956336.1|DC956336
EST:     AAGTACCGTTTCGNTGTGCGGTTC                         ACCAACAAGGATATTGTTGCGCAANTCACCTATGCCACTCTTGCTGGAGAT
genomic: AAGTACCGTTTCGTTGTGCGGTTCgtatcctttg ... accctttcagACCAACAAGGATATTGTTGCGCAAATCACCTATGCCACTCTTGCTGGAGAT
EST: gi|67508343|gb|BJ941211.1|BJ941211
EST:     AAGATAAGAACAAGTACAACACCCCCAAGTACCGTTTCGTTGTGCGGTTC                         ACCAACAAGGATATTGTTGCGCAAATCACCTATGCCACTCTTGCTGGAGAT
genomic: AAGATAAGAACAAGTACAACACCCCCAAGTACCGTTTCGTTGTGCGGTTCgtatcctttg ... accctttcagACCAACAAGGATATTGTTGCGCAAATCACCTATGCCACTCTTGCTGGAGAT
EST: gi|67573313|gb|BJ946137.1|BJ946137
EST:     AAGATAAGAACAAGTACAACACCCCCAAGTACCGTTTCGTTGTGCGGTTC                         ACCAACAAGGATATTGTTGCGCAAATCACCTATGCCACTCTTGCTGGAGAT
genomic: AAGATAAGAACAAGTACAACACCCCCAAGTACCGTTTCGTTGTGCGGTTCgtatcctttg ... accctttcagACCAACAAGGATATTGTTGCGCAAATCACCTATGCCACTCTTGCTGGAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcgtgtatgatcggtctagtttgttgttagcgaaccttgacctaccctttcagACCAACAAGGATATTGTTGCGCAAATCACCTATGCCACTCTTGCTGGAGATATTGTTCTTACCTCTGCCTACGCCCATGAGCTCCCTCGGTATGGTCTGA
                                  aaccttgac  putative branch site 
                                          cctaccctttc  CT-rich tract